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BioC 2.13: BUILD BIN report for ChemmineOB on perceval

This page was generated on 2014-04-05 09:53:13 -0700 (Sat, 05 Apr 2014).

Package 127/750HostnameOS / ArchBUILDCHECKBUILD BIN
ChemmineOB 1.0.1
Kevin Horan
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/ChemmineOB
Last Changed Rev: 81952 / Revision: 88450
Last Changed Date: 2013-10-21 13:36:37 -0700 (Mon, 21 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: ChemmineOB
Version: 1.0.1
Command: rm -rf ChemmineOB.buildbin-libdir && mkdir ChemmineOB.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChemmineOB_1.0.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ChemmineOB.buildbin-libdir
StartedAt: 2014-04-05 05:17:35 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:17:43 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 7.7 seconds
RetCode: 0
Status:  OK 
PackageFile: ChemmineOB_1.0.1.tgz
PackageFileSize: 672.9 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ChemmineOB.buildbin-libdir ChemmineOB_1.0.1.tar.gz'
>>>>>>> 

* installing *source* package ‘ChemmineOB’ ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for gcc... llvm-gcc-4.2 -arch x86_64 -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether llvm-gcc-4.2 -arch x86_64 -std=gnu99 accepts -g... yes
checking for llvm-gcc-4.2 -arch x86_64 -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... llvm-gcc-4.2 -arch x86_64 -std=gnu99 -E
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -I/usr/local/include/openbabel-2.0 -fPIC  -mtune=core2 -g -O2 -Wall  -c openbabel.cc -o openbabel.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o ChemmineOB.so openbabel.o -I/usr/local/lib/openbabel/2.3.1 -lopenbabel -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/ChemmineOB.buildbin-libdir/ChemmineOB/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ChemmineOB)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ChemmineOB.buildbin-libdir/ChemmineOB/libs//ChemmineOB.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "ChemmineOB.buildbin-libdir/ChemmineOB/libs//ChemmineOB.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "ChemmineOB.buildbin-libdir/ChemmineOB/libs//ChemmineOB.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "ChemmineOB.buildbin-libdir/ChemmineOB/libs//ChemmineOB.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "ChemmineOB.buildbin-libdir/ChemmineOB/libs//ChemmineOB.so"