BioC 2.13: CHECK report for BuxcoR on perceval

Package: BuxcoR

Version: 0.99.2

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BuxcoR_0.99.2.tar.gz

StartedAt: 2013-07-26 21:59:05 -0700 (Fri, 26 Jul 2013)

EndedAt: 2013-07-26 22:01:20 -0700 (Fri, 26 Jul 2013)

EllapsedTime: 134.9 seconds

RetCode: 0

Status:  OK

CheckDir: BuxcoR.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.13-bioc/meat/BuxcoR.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'BuxcoR/DESCRIPTION' ... OK
* this is package 'BuxcoR' version '0.99.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'BuxcoR' can be installed ... [9s/9s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [20s/20s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
parsing 5.934  0.125   6.091
BuxcoR  5.814  0.157   6.003
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'runTests.R' [22s/23s]
 [23s/23s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'BuxcoR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BuxcoR)

name	user	system	elapsed
BuxcoDB	1.551	0.093	1.649
BuxcoR	5.814	0.157	6.003
add_query_funcs	0.672	0.043	0.722
dbImport	0.593	0.046	0.649
parsing	5.934	0.125	6.091