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BioC 2.13: CHECK report for BiocParallel on moscato1

This page was generated on 2014-04-05 09:51:06 -0700 (Sat, 05 Apr 2014).

Package 82/750HostnameOS / ArchBUILDCHECKBUILD BIN
BiocParallel 0.4.1
Bioconductor Package Maintainer
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/BiocParallel
Last Changed Rev: 81898 / Revision: 88450
Last Changed Date: 2013-10-20 10:07:38 -0700 (Sun, 20 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  TIMEOUT  OK 

Summary

Package: BiocParallel
Version: 0.4.1
Command: rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BiocParallel.buildbin-libdir BiocParallel_0.4.1.tar.gz >BiocParallel-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=BiocParallel.buildbin-libdir --install="check:BiocParallel-install.out" --force-multiarch --no-vignettes --timings BiocParallel_0.4.1.tar.gz && mv BiocParallel.buildbin-libdir/* BiocParallel.Rcheck/ && rmdir BiocParallel.buildbin-libdir
StartedAt: 2014-04-05 02:32:12 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 02:35:56 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 223.9 seconds
RetCode: 0
Status:  OK  
CheckDir: BiocParallel.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/BiocParallel.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BiocParallel/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BiocParallel' version '0.4.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BiocParallel' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'parallel:::getClusterOption'
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [9s] OK
** running examples for arch 'x64' ... [10s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'test.R' [67s]
 [67s] OK
** running tests for arch 'x64'
  Running 'test.R' [83s]
 [83s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/BiocParallel.Rcheck/00check.log'
for details.

BiocParallel.Rcheck/00install.out:


install for i386

* installing *source* package 'BiocParallel' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'BiocParallel' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocParallel' as BiocParallel_0.4.1.zip
* DONE (BiocParallel)

BiocParallel.Rcheck/examples_i386/BiocParallel-Ex.timings:

nameusersystemelapsed
AllClasses0.030.000.03
BatchJobsParam-class0.720.051.83
DoparParam-class0.170.001.59
MulticoreParam-class0.040.000.05
SerialParam-class0.080.000.08
SnowParam-class0.030.003.64
bpcontrols000
bplapply0.050.000.05
bpmapply0.040.020.06
bpschedule0.020.000.01
bpvec0.050.000.05
bpvectorize0.010.000.02
register000

BiocParallel.Rcheck/examples_x64/BiocParallel-Ex.timings:

nameusersystemelapsed
AllClasses0.010.000.01
BatchJobsParam-class1.390.192.78
DoparParam-class0.250.011.59
MulticoreParam-class0.040.000.03
SerialParam-class0.020.000.02
SnowParam-class0.000.003.84
bpcontrols0.010.000.01
bplapply0.10.00.1
bpmapply0.140.000.14
bpschedule0.020.000.02
bpvec0.080.000.08
bpvectorize0.010.000.01
register0.020.000.02