BioC 2.13: CHECK report for BiocInstaller on perceval
This page was generated on 2014-04-05 09:52:38 -0700 (Sat, 05 Apr 2014).
BiocInstaller 1.12.0 Bioconductor Package Maintainer
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/BiocInstaller | Last Changed Rev: 81642 / Revision: 88450 | Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | [ OK ] | OK |
Summary
Package: BiocInstaller |
Version: 1.12.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BiocInstaller_1.12.0.tar.gz |
StartedAt: 2014-04-04 23:45:18 -0700 (Fri, 04 Apr 2014) |
EndedAt: 2014-04-04 23:45:52 -0700 (Fri, 04 Apr 2014) |
EllapsedTime: 33.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: BiocInstaller.Rcheck |
Warnings: 0 |
Command output
* using log directory ‘/Users/biocbuild/bbs-2.13-bioc/meat/BiocInstaller.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BiocInstaller/DESCRIPTION’ ... OK
* this is package ‘BiocInstaller’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocInstaller’ can be installed ... [1s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
‘.updateBioconductorPackageFinish’ ‘.updateFinish’
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [9s/10s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
biocValid 7.314 0.814 9.102
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running ‘BiocInstaller_unit_tests.R’ [3s/3s]
[3s/3s] OK
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/Users/biocbuild/bbs-2.13-bioc/meat/BiocInstaller.Rcheck/00check.log’
for details.
BiocInstaller.Rcheck/00install.out:
* installing *source* package ‘BiocInstaller’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Bioconductor version 2.13 (BiocInstaller 1.12.0), ?biocLite for help
* DONE (BiocInstaller)
BiocInstaller.Rcheck/BiocInstaller-Ex.timings:
name | user | system | elapsed
|
BiocUpgrade | 0.005 | 0.001 | 0.005 |
|
biocLite | 0.060 | 0.005 | 0.066 |
|
biocValid | 7.314 | 0.814 | 9.102 |
|
biocVersion | 0.003 | 0.004 | 0.008 |
|
biocinstallRepos | 0.006 | 0.007 | 0.014 |
|
packageGroups | 0.142 | 0.054 | 0.209 |
|
useDevel | 0.002 | 0.005 | 0.006 |
|