BioC 2.13: CHECK report for AnnotationHub on moscato1

Package: AnnotationHub

Version: 1.2.0

Command: rm -rf AnnotationHub.buildbin-libdir && mkdir AnnotationHub.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AnnotationHub.buildbin-libdir AnnotationHub_1.2.0.tar.gz >AnnotationHub-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=AnnotationHub.buildbin-libdir --install="check:AnnotationHub-install.out" --force-multiarch --no-vignettes --timings AnnotationHub_1.2.0.tar.gz && mv AnnotationHub.buildbin-libdir/* AnnotationHub.Rcheck/ && rmdir AnnotationHub.buildbin-libdir

StartedAt: 2014-04-05 02:12:25 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 02:26:03 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 817.4 seconds

RetCode: 0

Status:  OK

CheckDir: AnnotationHub.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/AnnotationHub.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AnnotationHub/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AnnotationHub' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AnnotationHub' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'BiocGenerics:::testPackage'
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [71s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
AnnotationHub-class 3.61   0.16   66.31
** running examples for arch 'x64' ... [75s] OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
AnnotationHub-class 4.69   0.16   69.36
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'AnnotationHub_unit_tests.R' [263s]
 [264s] OK
** running tests for arch 'x64'
  Running 'AnnotationHub_unit_tests.R' [265s]
 [265s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/AnnotationHub.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'AnnotationHub' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'AnnotationHub' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AnnotationHub' as AnnotationHub_1.2.0.zip
* DONE (AnnotationHub)

name	user	system	elapsed
AnnotationHub-class	3.61	0.16	66.31

name	user	system	elapsed
AnnotationHub-class	4.69	0.16	69.36