BioC 2.13: CHECK report for AnnotationFuncs on moscato1
This page was generated on 2014-04-05 09:50:17 -0700 (Sat, 05 Apr 2014).
AnnotationFuncs 1.12.0 Stefan McKinnon Edwards
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/AnnotationFuncs | Last Changed Rev: 81642 / Revision: 88450 | Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | WARNINGS | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ WARNINGS ] | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | WARNINGS | OK |
Summary
Package: AnnotationFuncs
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Version: 1.12.0
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Command: rm -rf AnnotationFuncs.buildbin-libdir && mkdir AnnotationFuncs.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AnnotationFuncs.buildbin-libdir AnnotationFuncs_1.12.0.tar.gz >AnnotationFuncs-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=AnnotationFuncs.buildbin-libdir --install="check:AnnotationFuncs-install.out" --force-multiarch --no-vignettes --timings AnnotationFuncs_1.12.0.tar.gz && mv AnnotationFuncs.buildbin-libdir/* AnnotationFuncs.Rcheck/ && rmdir AnnotationFuncs.buildbin-libdir
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StartedAt: 2014-04-05 02:11:46 -0700 (Sat, 05 Apr 2014)
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EndedAt: 2014-04-05 02:13:34 -0700 (Sat, 05 Apr 2014)
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EllapsedTime: 107.7 seconds
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RetCode: 0
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Status: WARNINGS
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CheckDir: AnnotationFuncs.Rcheck
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Warnings: 1
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Command output
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/AnnotationFuncs.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AnnotationFuncs/DESCRIPTION' ... OK
* this is package 'AnnotationFuncs' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AnnotationFuncs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
Error in bibentry(bibtype = entry, textVersion = textVersion, header = header, footer = footer, ...): argument "textVersion" is missing, with no default
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'AnnotationDbi'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
'AnnotationFuncsUserguide.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [10s] OK
** running examples for arch 'x64' ... [7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
'D:/biocbld/bbs-2.13-bioc/meat/AnnotationFuncs.Rcheck/00check.log'
for details.
AnnotationFuncs.Rcheck/00install.out:
install for i386
* installing *source* package 'AnnotationFuncs' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'AnnotationFuncs' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AnnotationFuncs' as AnnotationFuncs_1.12.0.zip
* DONE (AnnotationFuncs)
AnnotationFuncs.Rcheck/examples_i386/AnnotationFuncs-Ex.timings:
name | user | system | elapsed
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AnnotationFuncs-package | 0.63 | 0.03 | 1.04 |
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getEvidenceCodes | 0 | 0 | 0 |
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getOrthologs | 0.67 | 0.05 | 2.42 |
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mapLists | 0.02 | 0.00 | 0.02 |
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pickGO | 0.08 | 0.00 | 2.03 |
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pickRefSeq | 0.08 | 0.01 | 0.53 |
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removeNAs | 0.02 | 0.00 | 0.01 |
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translate | 0.25 | 0.03 | 0.36 |
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AnnotationFuncs.Rcheck/examples_x64/AnnotationFuncs-Ex.timings:
name | user | system | elapsed
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AnnotationFuncs-package | 0.75 | 0.01 | 0.76 |
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getEvidenceCodes | 0 | 0 | 0 |
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getOrthologs | 0.84 | 0.03 | 0.98 |
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mapLists | 0.03 | 0.00 | 0.03 |
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pickGO | 0.08 | 0.00 | 0.08 |
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pickRefSeq | 0.23 | 0.00 | 0.23 |
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removeNAs | 0.02 | 0.00 | 0.02 |
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translate | 0.24 | 0.07 | 0.30 |
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