BioC 2.13: CHECK report for ASSET on moscato1
This page was generated on 2014-04-05 09:51:28 -0700 (Sat, 05 Apr 2014).
ASSET 1.0.0 William Wheeler
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/ASSET | Last Changed Rev: 81642 / Revision: 88450 | Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Summary
Package: ASSET
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Version: 1.0.0
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Command: rm -rf ASSET.buildbin-libdir && mkdir ASSET.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ASSET.buildbin-libdir ASSET_1.0.0.tar.gz >ASSET-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=ASSET.buildbin-libdir --install="check:ASSET-install.out" --force-multiarch --no-vignettes --timings ASSET_1.0.0.tar.gz && mv ASSET.buildbin-libdir/* ASSET.Rcheck/ && rmdir ASSET.buildbin-libdir
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StartedAt: 2014-04-05 02:19:52 -0700 (Sat, 05 Apr 2014)
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EndedAt: 2014-04-05 02:22:40 -0700 (Sat, 05 Apr 2014)
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EllapsedTime: 168.3 seconds
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RetCode: 0
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Status: OK
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CheckDir: ASSET.Rcheck
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Warnings: 0
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Command output
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/ASSET.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASSET/DESCRIPTION' ... OK
* this is package 'ASSET' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASSET' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components with restrictions not permitted:
GPL-2 + file LICENSE
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'rmeta'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
'vignette.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [18s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
h.types 11.68 0.02 11.7
** running examples for arch 'x64' ... [24s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
h.types 15.66 0.04 15.71
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
Running 'runTests.R' [13s]
[13s] OK
** running tests for arch 'x64'
Running 'runTests.R' [17s]
[17s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 3 notes.
See
'D:/biocbld/bbs-2.13-bioc/meat/ASSET.Rcheck/00check.log'
for details.
ASSET.Rcheck/00install.out:
install for i386
* installing *source* package 'ASSET' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'ASSET' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASSET' as ASSET_1.0.0.zip
* DONE (ASSET)
ASSET.Rcheck/examples_i386/ASSET-Ex.timings:
name | user | system | elapsed
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ex_trait | 0.11 | 0.00 | 0.11 |
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ex_types | 0.01 | 0.00 | 0.02 |
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h.forestPlot | 1.08 | 0.00 | 1.07 |
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h.summary | 0.67 | 0.00 | 0.72 |
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h.traits | 0.66 | 0.00 | 0.66 |
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h.types | 11.68 | 0.02 | 11.70 |
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p.dlm | 0.03 | 0.00 | 0.03 |
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p.tube | 0.05 | 0.00 | 0.05 |
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z.max | 0.03 | 0.00 | 0.03 |
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ASSET.Rcheck/examples_x64/ASSET-Ex.timings:
name | user | system | elapsed
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ex_trait | 0.01 | 0.01 | 0.03 |
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ex_types | 0.03 | 0.00 | 0.04 |
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h.forestPlot | 1.39 | 0.02 | 1.40 |
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h.summary | 1.20 | 0.01 | 1.22 |
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h.traits | 0.85 | 0.00 | 0.84 |
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h.types | 15.66 | 0.04 | 15.71 |
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p.dlm | 0.04 | 0.00 | 0.04 |
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p.tube | 0.03 | 0.00 | 0.03 |
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z.max | 0.05 | 0.00 | 0.05 |
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