minet 3.14.0
Patrick E. Meyer
| Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/minet | | Last Changed Rev: 75263 / Revision: 76155 | | Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
| pelham | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=minet.buildbin-libdir minet_3.14.0.tar.gz'
>>>>>>>
* installing *source* package 'minet' ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c aracne.cpp -o aracne.o
aracne.cpp:27:8: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
n = *size;
˜ ^˜˜˜˜
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c clr.cpp -o clr.o
clr.cpp:23:6: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
n=*size;
˜^˜˜˜˜
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c minet.cpp -o minet.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c mrnet.cpp -o mrnet.o
mrnet.cpp:25:8: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
n = *size;
˜ ^˜˜˜˜
mrnet.cpp:143:8: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
n = *size;
˜ ^˜˜˜˜
mrnet.cpp:191:39: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
red[l] += mim[l*n+jmax];
^˜
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c validate.cpp -o validate.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o minet.so aracne.o clr.o minet.o mrnet.o validate.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/minet.buildbin-libdir/minet/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (minet)
>>>>>>>
>>>>>>> FIXING LINKS FOR minet.buildbin-libdir/minet/libs//minet.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "minet.buildbin-libdir/minet/libs//minet.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "minet.buildbin-libdir/minet/libs//minet.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "minet.buildbin-libdir/minet/libs//minet.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "minet.buildbin-libdir/minet/libs//minet.so"