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Package 283/671HostnameOS / ArchBUILDCHECKBUILD BIN
GlobalAncova 3.28.0
Manuela Hummel
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/GlobalAncova
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: GlobalAncova
Version: 3.28.0
Command: rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GlobalAncova_3.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GlobalAncova.buildbin-libdir
StartedAt: 2013-05-01 12:28:35 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 12:28:53 -0700 (Wed, 01 May 2013)
EllapsedTime: 18.2 seconds
RetCode: 0
Status:  OK 
PackageFile: GlobalAncova_3.28.0.tgz
PackageFileSize: 1.099 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GlobalAncova.buildbin-libdir GlobalAncova_3.28.0.tar.gz'
>>>>>>> 

* installing *source* package 'GlobalAncova' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c:31:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tDD = (double *) malloc ( (*sD)*(*sD)*sizeof(double) ) ;
                             ˜˜˜˜˜^˜˜˜˜˜˜
GlobalAncova.c:34:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (*sD)*(*sD)*sizeof(double));
      ˜˜˜˜˜^˜˜˜˜˜˜
GlobalAncova.c:36:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tmp = (double *) malloc ( (*sD)*(*sD)*sizeof(double) ) ;
                             ˜˜˜˜˜^˜˜˜˜˜˜
GlobalAncova.c:39:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (*sD)*(*sD)*sizeof(double) );
      ˜˜˜˜˜^˜˜˜˜˜˜
GlobalAncova.c:41:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tmp2 = (double *) malloc ( (*zD)*(*sD)*sizeof(double) ) ;
                              ˜˜˜˜˜^˜˜˜˜˜˜
GlobalAncova.c:44:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (*zD)*(*sD)*sizeof(double)  );
      ˜˜˜˜˜^˜˜˜˜˜˜
GlobalAncova.c:46:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
   tmp3 = (double *) malloc ( (*zD)*(*zD)*sizeof(double) ) ;
                              ˜˜˜˜˜^˜˜˜˜˜˜
GlobalAncova.c:49:12: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (*zD)*(*zD)*sizeof(double) );
      ˜˜˜˜˜^˜˜˜˜˜˜
GlobalAncova.c:86:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    R_full = (double *) malloc ( (*zxx)*(*zD_full) * sizeof(double) );
                                 ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
GlobalAncova.c:89:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (*zxx)*(*zD_full) * sizeof(double) );
      ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
GlobalAncova.c:98:41: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      R_red = (double *) malloc ( (*zxx)*(*zD_red) * sizeof(double) );
                                  ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
GlobalAncova.c:101:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        (*zxx)*(*zD_red) * sizeof(double) );
        ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
GlobalAncova.c:146:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  SS_full_i  = (double *) malloc ( (*zrr) * sizeof(double)) ;
                                    ^˜˜˜  ˜
GlobalAncova.c:149:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     (*zrr) * sizeof(double) );
      ^˜˜˜  ˜
GlobalAncova.c:151:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  SS_extra_i = (double *) malloc ( (*zrr) * sizeof(double)) ;
                                    ^˜˜˜  ˜
GlobalAncova.c:154:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    (*zrr) * sizeof(double));
     ^˜˜˜  ˜
GlobalAncova.c:156:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  F_perm     = (double *) malloc ( (*n_test_genes) * sizeof(double));
                                    ^˜˜˜˜˜˜˜˜˜˜˜˜  ˜
GlobalAncova.c:159:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    (*n_test_genes) * sizeof(double));
     ^˜˜˜˜˜˜˜˜˜˜˜˜  ˜
GlobalAncova.c:161:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  tDD_perm   = (double *) malloc ( (*sD_full)*(*sD_full) * sizeof(double)) ;  
                                   ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
GlobalAncova.c:164:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    (*sD_full)*(*sD_full) * sizeof(double));
    ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
GlobalAncova.c:168:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    ord_perm = (int *) malloc ( (*N_Subjects) * sizeof(int) ) ;
                                 ^˜˜˜˜˜˜˜˜˜˜  ˜
GlobalAncova.c:171:8: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (*N_Subjects) * sizeof(int));
       ^˜˜˜˜˜˜˜˜˜˜  ˜
GlobalAncova.c:248:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  SS_full_i  = (double *) malloc ( (*zrr) * sizeof(double)) ;
                                    ^˜˜˜  ˜
GlobalAncova.c:251:7: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
     (*zrr) * sizeof(double) );
      ^˜˜˜  ˜
GlobalAncova.c:253:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  SS_extra_i = (double *) malloc ( (*zrr) * sizeof(double)) ;
                                    ^˜˜˜  ˜
GlobalAncova.c:256:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    (*zrr) * sizeof(double));
     ^˜˜˜  ˜
GlobalAncova.c:258:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  F_perm     = (double *) malloc ( (*n_test_genes) * sizeof(double));
                                    ^˜˜˜˜˜˜˜˜˜˜˜˜  ˜
GlobalAncova.c:261:6: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    (*n_test_genes) * sizeof(double));
     ^˜˜˜˜˜˜˜˜˜˜˜˜  ˜
GlobalAncova.c:263:46: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  tDD_perm   = (double *) malloc ( (*sD_full)*(*sD_full) * sizeof(double)) ;  
                                   ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
GlobalAncova.c:266:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    (*sD_full)*(*sD_full) * sizeof(double));
    ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
GlobalAncova.c:270:34: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
    ord_perm = (int *) malloc ( (*N_Subjects) * sizeof(int) ) ;
                                 ^˜˜˜˜˜˜˜˜˜˜  ˜
GlobalAncova.c:273:8: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
      (*N_Subjects) * sizeof(int));
       ^˜˜˜˜˜˜˜˜˜˜  ˜
32 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c ludcmp.c -o ludcmp.o
ludcmp.c:37:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
        vv = (double *) malloc(n * sizeof(double));
                               ^ ˜
ludcmp.c:189:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  if ( ( col = (double *) malloc((*n) * sizeof(double)) ) == NULL )
                                  ^˜  ˜
ludcmp.c:192:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  if ( ( indx = (int *) malloc((*n) * sizeof(int)) ) == NULL )
                                ^˜  ˜
ludcmp.c:223:33: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
  if ( ( indx = (int *) malloc((*n) * sizeof(int)) ) == NULL )
                                ^˜  ˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c matrix.c -o matrix.o
matrix.c:32:10: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
        srand ( (int) (seed) ) ;
        ˜˜˜˜˜   ^˜˜˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o GlobalAncova.so GlobalAncova.o ludcmp.o matrix.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/GlobalAncova.buildbin-libdir/GlobalAncova/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GlobalAncova)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GlobalAncova.buildbin-libdir/GlobalAncova/libs//GlobalAncova.so"