>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=snpStats.buildbin-libdir snpStats_1.10.0.tar.gz'
>>>>>>>
* installing *source* package 'snpStats' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c Runcertain.c -o Runcertain.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c adler32.c -o adler32.o
adler32.c:141:22: warning: implicit conversion changes signedness: 'off_t' (aka 'long long') to 'unsigned long long' [-Wsign-conversion]
rem = (unsigned)(len2 % BASE);
^˜˜˜ ˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c bind.c -o bind.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c compress.c -o compress.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c count_gt.c -o count_gt.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c covwin.c -o covwin.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c crc32.c -o crc32.o
crc32.c:275:47: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
c = crc_table[0][(c ^ *buf++) & 0xff] ^ (c >> 8);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
crc32.c:281:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:261:17: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:260:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:281:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:261:25: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:260:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:281:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:261:33: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:260:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:281:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:261:41: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:260:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:281:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:261:49: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:260:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:281:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:261:57: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:260:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:281:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:261:65: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:260:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:281:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT32;
^˜˜˜˜˜˜
crc32.c:261:73: note: expanded from macro 'DOLIT32'
#define DOLIT32 DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4; DOLIT4
^˜˜˜˜˜
crc32.c:260:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:285:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOLIT4;
^˜˜˜˜˜
crc32.c:260:44: note: expanded from macro 'DOLIT4'
crc_table[1][(c >> 16) & 0xff] ^ crc_table[0][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:291:47: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
c = crc_table[0][(c ^ *buf++) & 0xff] ^ (c >> 8);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
crc32.c:315:46: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
c = crc_table[4][(c >> 24) ^ *buf++] ^ (c << 8);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
crc32.c:322:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:301:17: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:300:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:322:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:301:25: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:300:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:322:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:301:33: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:300:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:322:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:301:41: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:300:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:322:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:301:49: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:300:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:322:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:301:57: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:300:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:322:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:301:65: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:300:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:322:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG32;
^˜˜˜˜˜˜
crc32.c:301:73: note: expanded from macro 'DOBIG32'
#define DOBIG32 DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4; DOBIG4
^˜˜˜˜˜
crc32.c:300:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:326:9: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
DOBIG4;
^˜˜˜˜˜
crc32.c:300:44: note: expanded from macro 'DOBIG4'
crc_table[6][(c >> 16) & 0xff] ^ crc_table[7][c >> 24]
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
crc32.c:333:46: warning: implicit conversion loses integer precision: 'unsigned long' to 'u4' (aka 'unsigned int') [-Wshorten-64-to-32]
c = crc_table[4][(c >> 24) ^ *buf++] ^ (c << 8);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
22 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c deflate.c -o deflate.o
deflate.c:272:17: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->w_bits = windowBits;
˜ ^˜˜˜˜˜˜˜˜˜
deflate.c:276:29: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->hash_bits = memLevel + 7;
˜ ˜˜˜˜˜˜˜˜˜^˜˜
deflate.c:462:21: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->good_match = good_length;
˜ ^˜˜˜˜˜˜˜˜˜˜
deflate.c:463:25: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->max_lazy_match = max_lazy;
˜ ^˜˜˜˜˜˜˜
deflate.c:465:27: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->max_chain_length = max_chain;
˜ ^˜˜˜˜˜˜˜˜
deflate.c:728:29: warning: implicit conversion loses integer precision: 'int' to 'Bytef' (aka 'unsigned char') [-Wconversion]
put_byte(s, val);
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
./deflate.h:275:57: note: expanded from macro 'put_byte'
#define put_byte(s, c) {s->pending_buf[s->pending++] = (c);}
^
deflate.c:759:29: warning: implicit conversion loses integer precision: 'int' to 'Bytef' (aka 'unsigned char') [-Wconversion]
put_byte(s, val);
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
./deflate.h:275:57: note: expanded from macro 'put_byte'
#define put_byte(s, c) {s->pending_buf[s->pending++] = (c);}
^
deflate.c:1071:23: warning: implicit conversion changes signedness: 'uInt' (aka 'unsigned int') to 'int' [-Wsign-conversion]
int best_len = s->prev_length; /* best match length so far */
˜˜˜˜˜˜˜˜ ˜˜˜^˜˜˜˜˜˜˜˜˜˜
deflate.c:1106:58: warning: implicit conversion changes signedness: 'uInt' (aka 'unsigned int') to 'int' [-Wsign-conversion]
if ((uInt)nice_match > s->lookahead) nice_match = s->lookahead;
˜ ˜˜˜^˜˜˜˜˜˜˜˜
deflate.c:1380:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
n = read_buf(s->strm, s->window + s->strstart + s->lookahead, more);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
deflate.c:1495:24: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
max_start = s->block_start + max_block_size;
˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
deflate.c:1564:44: warning: implicit conversion loses integer precision: 'unsigned int' to 'uch' (aka 'unsigned char') [-Wconversion]
s->match_length - MIN_MATCH, bflush);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./deflate.h:327:16: note: expanded from macro '_tr_tally_dist'
{ uch len = (length); \
^
deflate.c:1563:43: warning: implicit conversion loses integer precision: 'unsigned int' to 'ush' (aka 'unsigned short') [-Wconversion]
_tr_tally_dist(s, s->strstart - s->match_start,
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./deflate.h:328:17: note: expanded from macro '_tr_tally_dist'
ush dist = (distance); \
^
deflate.c:1683:43: warning: implicit conversion loses integer precision: 'unsigned int' to 'uch' (aka 'unsigned char') [-Wconversion]
s->prev_length - MIN_MATCH, bflush);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./deflate.h:327:16: note: expanded from macro '_tr_tally_dist'
{ uch len = (length); \
^
deflate.c:1682:46: warning: implicit conversion loses integer precision: 'unsigned int' to 'ush' (aka 'unsigned short') [-Wconversion]
_tr_tally_dist(s, s->strstart -1 - s->prev_match,
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./deflate.h:328:17: note: expanded from macro '_tr_tally_dist'
ush dist = (distance); \
^
deflate.c:1775:45: warning: implicit conversion changes signedness: 'int' to 'uInt' (aka 'unsigned int') [-Wsign-conversion]
s->match_length = MAX_MATCH - (int)(strend - scan);
˜ ˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
deflate.c:1785:50: warning: implicit conversion loses integer precision: 'unsigned int' to 'uch' (aka 'unsigned char') [-Wconversion]
_tr_tally_dist(s, 1, s->match_length - MIN_MATCH, bflush);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
./deflate.h:327:16: note: expanded from macro '_tr_tally_dist'
{ uch len = (length); \
^
17 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c force_hom.c -o force_hom.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c fst.c -o fst.o
fst.c:70:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(na, 0x00, ngrp*sizeof(int));
^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
fst.c:70:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(na, 0x00, ngrp*sizeof(int));
^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
fst.c:97:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(na, 0x00, ngrp*sizeof(int));
^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
fst.c:97:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(na, 0x00, ngrp*sizeof(int));
^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
fst.c:98:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(na2, 0x00, ngrp*sizeof(int));
^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
fst.c:98:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(na2, 0x00, ngrp*sizeof(int));
^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c glm_test.c -o glm_test.o
glm_test.c:424:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(U, 0x00, nc*P*sizeof(double));
˜˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test.c:424:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(U, 0x00, nc*P*sizeof(double));
˜˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test.c:478:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Zri, 0x00, N*sizeof(double));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test.c:478:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Zri, 0x00, N*sizeof(double));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test.c:596:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Uc, 0x00, C*P*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test.c:596:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Uc, 0x00, C*P*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test.c:614:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(meatrix, 0x00, sizeof(double)*(P*(P+1))/2);
˜ ˜^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test.c:614:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(meatrix, 0x00, sizeof(double)*(P*(P+1))/2);
˜ ˜^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
8 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c glm_test_R.c -o glm_test_R.o
glm_test_R.c:59:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sstype = TYPEOF(Snp_subset);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:173:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *yd = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:174:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *fitted = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:175:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *prior = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:176:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *resid = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:177:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *weights = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:180:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
xb = (double *) R_alloc(N*M, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜
glm_test_R.c:191:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sntype = TYPEOF(snpNames);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:256:17: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
yd[i] = g2mean(yij)/2.0;
˜˜˜˜˜˜ ^˜˜
glm_test_R.c:267:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(u, 0x00, P*sizeof(double));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test_R.c:267:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(u, 0x00, P*sizeof(double));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test_R.c:268:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(v, 0x00, sizeof(double)*(P*(P+1))/2);
˜ ˜^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test_R.c:268:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(v, 0x00, sizeof(double)*(P*(P+1))/2);
˜ ˜^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test_R.c:296:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(u, 0x00, P*sizeof(double));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test_R.c:296:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(u, 0x00, P*sizeof(double));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test_R.c:297:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(v, 0x00, sizeof(double)*(P*(P+1))/2);
˜ ˜^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test_R.c:297:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(v, 0x00, sizeof(double)*(P*(P+1))/2);
˜ ˜^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test_R.c:513:25: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE tests_type = TYPEOF(Tests);
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:582:20: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int mallowed = N * REAL(MissAllow)[0];
˜˜˜˜˜˜˜˜ ˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:591:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *zw = (double *) R_alloc(N*test_size, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜˜˜˜˜˜˜˜˜
glm_test_R.c:592:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *prior = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:593:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *resid = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:594:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *resid_all = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:595:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *weights = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:596:44: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *weights_all = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:597:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *fitted = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:598:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *fitted_all = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:601:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
xb = (double *) R_alloc(N*M, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜
glm_test_R.c:602:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
xb_all = (double *) R_alloc(N*M, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜
glm_test_R.c:761:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(u, 0x00, nsnpt*sizeof(double));
^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test_R.c:761:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(u, 0x00, nsnpt*sizeof(double));
^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test_R.c:762:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(v, 0x00, sizeof(double)*(nsnpt*(nsnpt+1))/2);
˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test_R.c:762:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(v, 0x00, sizeof(double)*(nsnpt*(nsnpt+1))/2);
˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test_R.c:929:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(ru, 0x00, nu*sizeof(double));
^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test_R.c:929:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(ru, 0x00, nu*sizeof(double));
^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test_R.c:930:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(rv, 0x00, nv*sizeof(double));
^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
glm_test_R.c:930:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(rv, 0x00, nv*sizeof(double));
^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
glm_test_R.c:1043:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sstype = TYPEOF(Snp_subset);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:1144:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *yd = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1145:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *fitted = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1146:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *prior = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1147:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *resid = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1148:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *weights = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1149:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *xb = (double *) R_alloc(N*M, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜
glm_test_R.c:1151:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
int *which = (int *) R_alloc(P, sizeof(int));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1152:37: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *beta = (double *) R_alloc(P, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1153:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *tri = (double *) R_alloc((P*(P+1))/2, sizeof(double));
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
glm_test_R.c:1161:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sntype = TYPEOF(snpNames);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:1205:17: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
yd[i] = g2mean(yij)/2.0;
˜˜˜˜˜˜ ^˜˜
glm_test_R.c:1441:24: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sets_type = TYPEOF(Sets);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
glm_test_R.c:1510:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *new_prior = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1511:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *resid = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1512:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *weights = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1513:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *fitted = (double *) R_alloc(N, sizeof(double));
˜˜˜˜˜˜˜ ^
glm_test_R.c:1514:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *xb = (double *) R_alloc(N*M_max, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜˜˜˜˜
glm_test_R.c:1515:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *xz = (double *) R_alloc(N*M_max, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜˜˜˜˜
glm_test_R.c:1517:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *beta = (double *) R_alloc(M_max, sizeof(double));
˜˜˜˜˜˜˜ ^˜˜˜˜
glm_test_R.c:1518:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
int *which = (int *) R_alloc(M_max, sizeof(int));
˜˜˜˜˜˜˜ ^˜˜˜˜
glm_test_R.c:1519:53: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
double *tri = (double *) R_alloc((M_max*(M_max+1))/2, sizeof(double));
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
glm_test_R.c:1523:30: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
Uc = (double *) R_alloc(C*M_max, sizeof(double));
˜˜˜˜˜˜˜ ˜^˜˜˜˜˜
glm_test_R.c:1623:14: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int len = strlen(setname);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
61 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c gzclose.c -o gzclose.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c gzlib.c -o gzlib.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c gzread.c -o gzread.o
gzread.c:34:18: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
*have += ret;
˜˜ ^˜˜
gzread.c:31:15: warning: implicit conversion loses integer precision: 'ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
ret = read(state->fd, buf + *have, len - *have);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
gzread.c:81:11: warning: operand of ? changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
val = NEXT();
˜ ^˜˜˜˜˜
gzread.c:67:66: note: expanded from macro 'NEXT'
#define NEXT() ((strm->avail_in == 0 && gz_avail(state) == -1) ? -1 : \
^˜
gzread.c:81:11: warning: operand of ? changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
val = NEXT();
˜ ^˜˜˜˜˜
gzread.c:68:40: note: expanded from macro 'NEXT'
(strm->avail_in == 0 ? -1 : \
^˜
gzread.c:190:17: warning: expression result unused [-Wunused-value]
NEXT();
^˜˜˜˜˜
gzread.c:67:66: note: expanded from macro 'NEXT'
#define NEXT() ((strm->avail_in == 0 && gz_avail(state) == -1) ? -1 : \
^˜
gzread.c:191:17: warning: expression result unused [-Wunused-value]
NEXT();
^˜˜˜˜˜
gzread.c:67:66: note: expanded from macro 'NEXT'
#define NEXT() ((strm->avail_in == 0 && gz_avail(state) == -1) ? -1 : \
^˜
gzread.c:170:13: warning: expression result unused [-Wunused-value]
NEXT(); /* modification time */
^˜˜˜˜˜
gzread.c:67:66: note: expanded from macro 'NEXT'
#define NEXT() ((strm->avail_in == 0 && gz_avail(state) == -1) ? -1 : \
^˜
gzread.c:171:13: warning: expression result unused [-Wunused-value]
NEXT();
^˜˜˜˜˜
gzread.c:67:66: note: expanded from macro 'NEXT'
#define NEXT() ((strm->avail_in == 0 && gz_avail(state) == -1) ? -1 : \
^˜
gzread.c:172:13: warning: expression result unused [-Wunused-value]
NEXT();
^˜˜˜˜˜
gzread.c:67:66: note: expanded from macro 'NEXT'
#define NEXT() ((strm->avail_in == 0 && gz_avail(state) == -1) ? -1 : \
^˜
gzread.c:173:13: warning: expression result unused [-Wunused-value]
NEXT();
^˜˜˜˜˜
gzread.c:67:66: note: expanded from macro 'NEXT'
#define NEXT() ((strm->avail_in == 0 && gz_avail(state) == -1) ? -1 : \
^˜
gzread.c:174:13: warning: expression result unused [-Wunused-value]
NEXT(); /* extra flags */
^˜˜˜˜˜
gzread.c:67:66: note: expanded from macro 'NEXT'
#define NEXT() ((strm->avail_in == 0 && gz_avail(state) == -1) ? -1 : \
^˜
gzread.c:175:13: warning: expression result unused [-Wunused-value]
NEXT(); /* operating system */
^˜˜˜˜˜
gzread.c:67:66: note: expanded from macro 'NEXT'
#define NEXT() ((strm->avail_in == 0 && gz_avail(state) == -1) ? -1 : \
^˜
gzread.c:512:26: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
state->next[0] = c;
˜ ^
gzread.c:533:22: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
state->next[0] = c;
˜ ^
14 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c gzwrite.c -o gzwrite.o
gzwrite.c:79:33: warning: implicit conversion loses integer precision: 'ssize_t' (aka 'long') to 'int' [-Wshorten-64-to-32]
if (have && ((got = write(state->fd, state->next, have)) < 0 ||
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
gzwrite.c:251:43: warning: implicit conversion loses integer precision: 'int' to 'Bytef' (aka 'unsigned char') [-Wconversion]
strm->next_in[strm->avail_in++] = c;
˜ ^
gzwrite.c:257:14: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
buf[0] = c;
˜ ^
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c hash_index.c -o hash_index.o
hash_index.c:58:10: warning: implicit conversion changes signedness: 'const char' to 'unsigned int' [-Wsign-conversion]
h += *s;
˜˜ ^˜
hash_index.c:60:15: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return (h & bitmask);
˜ ^˜˜˜˜˜˜
hash_index.c:69:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
result->nodelist =(t_node *)calloc(hash_size, sizeof(t_node));
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
hash_index.c:82:17: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int idx = hash(name, db->bitmask);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
hash_index.c:108:27: warning: implicit conversion changes signedness: 'int' to 'char' [-Wsign-conversion]
*dup_low = (*dup_low) & 0xDF;
˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c hphase.c -o hphase.o
hphase.c:20:25: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(alleles, 0x00, nsnp*sizeof(int));
^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
hphase.c:20:25: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(alleles, 0x00, nsnp*sizeof(int));
^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
hphase.c:204:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(sum, 0x00, nht*sizeof(double));
^˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
hphase.c:204:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(sum, 0x00, nht*sizeof(double));
^˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c imputation.c -o imputation.o
imputation.c:61:18: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int maxit_em = REAL(EMcontr)[0]; /* Max EM iterations */
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
imputation.c:63:19: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int maxit_ipf = REAL(EMcontr)[2]; /* Max iterations for initial IPF */
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
imputation.c:64:17: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int tol_ipf = REAL(EMcontr)[3]; /* Convergence tolerance for initial IPF */
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
imputation.c:250:28: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
tcell[j] = tcell[j] | (xkj << sh);
˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
imputation.c:250:19: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
tcell[j] = tcell[j] | (xkj << sh);
^˜˜˜˜˜˜˜ ˜
imputation.c:255:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(contin, 0x00, tsize*sizeof(int));
^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
imputation.c:255:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(contin, 0x00, tsize*sizeof(int));
^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
imputation.c:257:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(hcontin, 0x00, tsize*sizeof(int));
^˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
imputation.c:257:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(hcontin, 0x00, tsize*sizeof(int));
^˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
imputation.c:654:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(gt, 0x00, nuse*sizeof(int));
^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
imputation.c:654:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(gt, 0x00, nuse*sizeof(int));
^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
imputation.c:715:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sutype = TYPEOF(Subset);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
12 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c in.c -o in.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c infback.c -o infback.o
infback.c:55:20: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
state->wbits = windowBits;
˜ ^˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c inffast.c -o inffast.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c inflate.c -o inflate.o
inflate.c:223:36: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if (bits > 16 || state->bits + bits > 32) return Z_STREAM_ERROR;
˜ ^˜˜˜
inflate.c:225:26: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
state->hold += value << state->bits;
˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
inflate.c:226:20: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
state->bits += bits;
˜˜ ^˜˜˜
inflate.c:748:62: warning: implicit conversion loses integer precision: 'unsigned int' to 'Bytef' (aka 'unsigned char') [-Wconversion]
state->head->name[state->length++] = len;
˜ ^˜˜
inflate.c:769:65: warning: implicit conversion loses integer precision: 'unsigned int' to 'Bytef' (aka 'unsigned char') [-Wconversion]
state->head->comment[state->length++] = len;
˜ ^˜˜
inflate.c:1231:55: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
(state->mode == TYPE ? 128 : 0) +
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c inftrees.c -o inftrees.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c input.c -o input.o
input.c:362:17: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int lfn = strlen(filename);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
input.c:733:14: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int la = strlen(a), lb = strlen(b);
˜˜ ^˜˜˜˜˜˜˜˜
input.c:733:30: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int la = strlen(a), lb = strlen(b);
˜˜ ^˜˜˜˜˜˜˜˜
input.c:761:13: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
char cu = toupper(c);
˜˜ ^˜˜˜˜˜˜˜˜˜
input.c:786:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
lenf = lenb = strlen(front);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
input.c:807:16: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int lenx = strlen(xi);
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
input.c:959:28: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(matrix, 0x00, N*sizeof(unsigned char));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
input.c:959:28: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(matrix, 0x00, N*sizeof(unsigned char));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
8 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c invert.c -o invert.o
invert.c:136:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
W = (double *) calloc((N*(N+1))/2, sizeof(double));
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c ipf.c -o ipf.o
ipf.c:84:25: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
int mbytes = msize*sizeof(double);
˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ipf.c:84:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int mbytes = msize*sizeof(double);
^˜˜˜˜˜
ipf.c:89:11: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int mi = bitxtr(i, mask);
˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
ipf.c:106:11: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int mi = bitxtr(i, mask);
˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c ld.c -o ld.o
ld.c:349:10: warning: unused variable 'OR' [-Wunused-variable]
double OR = ad/bc;
^
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c misc.c -o misc.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c mla.c -o mla.o
mla.c:32:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(swy, 0x00, nstrata*sizeof(double));
^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
mla.c:32:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(swy, 0x00, nstrata*sizeof(double));
^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
mla.c:33:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(swt, 0x00, nstrata*sizeof(double));
^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
mla.c:33:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(swt, 0x00, nstrata*sizeof(double));
^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c mvphenotype.c -o mvphenotype.o
mvphenotype.c:26:22: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(sumx, 0x00, Mx*sizeof(double));
^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
mvphenotype.c:26:22: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(sumx, 0x00, Mx*sizeof(double));
^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
mvphenotype.c:31:24: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(sumy, 0x00, My*sizeof(double));
^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
mvphenotype.c:31:24: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(sumy, 0x00, My*sizeof(double));
^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
mvphenotype.c:37:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(ssp, 0x00, nssp*sizeof(double));
^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
mvphenotype.c:37:21: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(ssp, 0x00, nssp*sizeof(double));
^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
mvphenotype.c:61:26: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(sumx, 0x00, Mx*sizeof(double));
^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
mvphenotype.c:61:26: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(sumx, 0x00, Mx*sizeof(double));
^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
mvphenotype.c:63:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(sumy, 0x00, My*sizeof(double));
^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
mvphenotype.c:63:21: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memset(sumy, 0x00, My*sizeof(double));
^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
mvphenotype.c:226:25: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE tests_type = TYPEOF(Tests);
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
mvphenotype.c:342:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(xmiss, 0x00, N*sizeof(int));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
mvphenotype.c:342:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(xmiss, 0x00, N*sizeof(int));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
mvphenotype.c:400:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(lorder_t, 0x00, N*sizeof(int));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
mvphenotype.c:400:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(lorder_t, 0x00, N*sizeof(int));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
mvphenotype.c:408:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(xmiss, 0x00, N*sizeof(int));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
mvphenotype.c:408:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(xmiss, 0x00, N*sizeof(int));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
mvphenotype.c:567:7: warning: variable 'df_rV' is uninitialized when used here [-Wuninitialized]
Free(df_rV);
^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:64:46: note: expanded from macro 'Free'
#define Free(p) (R_chk_free( (void *)(p) ), (p) = NULL)
^
mvphenotype.c:485:20: note: initialize the variable 'df_rV' to silence this warning
double *df_rV;
^
= NULL
18 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c outdata.c -o outdata.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c plink.c -o plink.o
plink.c:161:14: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
byte = byte | (recode[s] << 2*part);
˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
plink.c:180:14: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
byte = byte | (recode[s]<<2*part);
˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c read_uncertain.c -o read_uncertain.o
read_uncertain.c:38:21: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
while (isspace(ch=gzgetc(infile))){} /* Skip leading white space */
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
read_uncertain.c:45:25: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
} while (!(isspace(ch=gzgetc(infile))));
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
read_uncertain.c:53:18: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE tns = TYPEOF(Nsubject);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
read_uncertain.c:75:24: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
ncol = words/lines - 2;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
read_uncertain.c:80:18: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
ncol = words -2;
˜ ˜˜˜˜˜˜^˜
read_uncertain.c:99:40: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
PROTECT(Result = allocMatrix(RAWSXP, lines, ncol));
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
read_uncertain.c:170:18: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE tns = TYPEOF(Nsnp);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
read_uncertain.c:181:9: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
tns = TYPEOF(Snpcol);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
read_uncertain.c:211:21: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
N = words/lines - ncol_skip;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
read_uncertain.c:212:12: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
nsnp = lines;
˜ ^˜˜˜˜
read_uncertain.c:216:15: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
N = words - ncol_skip;
˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
11 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c readped.c -o readped.o
readped.c:96:17: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[0] = a1;
˜ ^˜
readped.c:100:19: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[1] = a2;
˜ ^˜
readped.c:109:14: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[1] = a2;
˜ ^˜
readped.c:114:19: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[1] = a1;
˜ ^˜
readped.c:118:19: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[1] = a1;
˜ ^˜
readped.c:193:17: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
acodes[i] = mval;
˜ ^˜˜˜
6 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c single_snp_tests.c -o single_snp_tests.o
single_snp_tests.c:38:20: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE stype = TYPEOF(Stratum);
˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
single_snp_tests.c:94:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sutype = TYPEOF(Subset);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
single_snp_tests.c:123:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sstype = TYPEOF(Snp_subset);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c snp_summary.c -o snp_summary.o
snp_summary.c:204:13: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
g2post(g, &p0, &p1, &p2);
˜˜˜˜˜˜ ^
snp_summary.c:232:24: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
calls_diploid[j] = nv;
˜ ^˜
snp_summary.c:455:13: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
g2post(g, &p0, &p1, &p2);
˜˜˜˜˜˜ ^
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c snpmpy.c -o snpmpy.o
snpmpy.c:93:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, P*M*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
snpmpy.c:93:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, P*M*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
snpmpy.c:108:20: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
unsigned char w = (int) snps[ki++];
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
snpmpy.c:135:24: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
double xik = g2mean(sik) - mean;
˜˜˜˜˜˜ ^˜˜
snpmpy.c:216:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*P*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
snpmpy.c:216:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*P*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
snpmpy.c:231:20: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
unsigned char w = (int) snps[ki++];
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
snpmpy.c:258:24: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
double xik = g2mean(sik) - mean;
˜˜˜˜˜˜ ^˜˜
8 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c solve_cubic.c -o solve_cubic.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c structure.c -o structure.o
structure.c:117:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Ti, 0x00, N*sizeof(int));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:117:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Ti, 0x00, N*sizeof(int));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
structure.c:119:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Tk, 0x00, M*sizeof(int));
^˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:119:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(Tk, 0x00, M*sizeof(int));
^˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
structure.c:149:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*N*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:149:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*N*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
structure.c:161:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(count, 0x00, nstrata*sizeof(int));
^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:161:27: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(count, 0x00, nstrata*sizeof(int));
^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
structure.c:162:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(acount, 0x00, nstrata*sizeof(double));
^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:162:28: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(acount, 0x00, nstrata*sizeof(double));
^˜˜˜˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
structure.c:441:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*N*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:441:25: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, N*N*sizeof(double));
˜^˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
structure.c:531:24: warning: implicit conversion changes signedness: 'R_len_t' (aka 'int') to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, Nout*sizeof(double));
^˜˜˜˜
/usr/include/secure/_string.h:74:41: note: expanded from macro 'memset'
? __builtin___memset_chk (dest, val, len, __darwin_obsz0 (dest)) \
^
structure.c:531:24: warning: implicit conversion changes signedness: 'R_len_t' (aka 'int') to 'unsigned long' [-Wsign-conversion]
memset(result, 0x00, Nout*sizeof(double));
^˜˜˜˜
/usr/include/secure/_string.h:75:38: note: expanded from macro 'memset'
: __inline_memset_chk (dest, val, len))
^
14 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c switch.c -o switch.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c tdt.c -o tdt.o
tdt.c:103:21: warning: implicit conversion changes signedness: 'int' to 'SEXPTYPE' (aka 'unsigned int') [-Wsign-conversion]
SEXPTYPE sstype = TYPEOF(Snp_subset);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c trees.c -o trees.o
trees.c:531:38: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
s->opt_len += (ulg)f * (bits + xbits);
˜ ˜˜˜˜˜^˜˜˜˜˜˜
trees.c:532:60: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if (stree) s->static_len += (ulg)f * (stree[n].Len + xbits);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
trees.c:565:31: warning: implicit conversion changes signedness: 'long' to 'unsigned long' [-Wsign-conversion]
*(long)tree[m].Freq;
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:595:60: warning: implicit conversion loses integer precision: 'int' to 'ush' (aka 'unsigned short') [-Wconversion]
next_code[bits] = code = (code + bl_count[bits-1]) << 1;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
trees.c:608:24: warning: implicit conversion loses integer precision: 'unsigned int' to 'ush' (aka 'unsigned short') [-Wconversion]
tree[n].Code = bi_reverse(next_code[len]++, len);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:777:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
do { send_code(s, curlen, s->bl_tree); } while (--count != 0);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:777:18: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
do { send_code(s, curlen, s->bl_tree); } while (--count != 0);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:781:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, curlen, s->bl_tree); count--;
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:781:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, curlen, s->bl_tree); count--;
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:784:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REP_3_6, s->bl_tree); send_bits(s, count-3, 2);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:784:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REP_3_6, s->bl_tree); send_bits(s, count-3, 2);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:784:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REP_3_6, s->bl_tree); send_bits(s, count-3, 2);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:784:48: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REP_3_6, s->bl_tree); send_bits(s, count-3, 2);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:787:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_3_10, s->bl_tree); send_bits(s, count-3, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:787:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_3_10, s->bl_tree); send_bits(s, count-3, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:787:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_3_10, s->bl_tree); send_bits(s, count-3, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:787:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_3_10, s->bl_tree); send_bits(s, count-3, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:790:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_11_138, s->bl_tree); send_bits(s, count-11, 7);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:790:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_11_138, s->bl_tree); send_bits(s, count-11, 7);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:790:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_11_138, s->bl_tree); send_bits(s, count-11, 7);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:790:52: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, REPZ_11_138, s->bl_tree); send_bits(s, count-11, 7);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:830:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
s->opt_len += 3*(max_blindex+1) + 5+5+4;
˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
trees.c:852:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, lcodes-257, 5); /* not +255 as stated in appnote.txt */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:852:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, lcodes-257, 5); /* not +255 as stated in appnote.txt */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:853:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, dcodes-1, 5);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:853:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, dcodes-1, 5);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:854:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, blcodes-4, 4); /* not -3 as stated in appnote.txt */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:854:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, blcodes-4, 4); /* not -3 as stated in appnote.txt */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:857:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, s->bl_tree[bl_order[rank]].Len, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:857:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, s->bl_tree[bl_order[rank]].Len, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:877:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (STORED_BLOCK<<1)+last, 3); /* send block type */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:877:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (STORED_BLOCK<<1)+last, 3); /* send block type */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:899:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, STATIC_TREES<<1, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:899:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, STATIC_TREES<<1, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:900:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, static_ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:900:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, static_ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:911:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, STATIC_TREES<<1, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:911:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, STATIC_TREES<<1, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:912:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, static_ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:912:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, static_ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:992:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (STATIC_TREES<<1)+last, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:992:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (STATIC_TREES<<1)+last, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:998:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (DYN_TREES<<1)+last, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:998:9: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, (DYN_TREES<<1)+last, 3);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1091:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, lc, ltree); /* send a literal byte */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1091:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, lc, ltree); /* send a literal byte */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1096:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, code+LITERALS+1, ltree); /* send the length code */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1096:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, code+LITERALS+1, ltree); /* send the length code */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1100:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, lc, extra); /* send the extra length bits */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1100:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, lc, extra); /* send the extra length bits */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1106:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, code, dtree); /* send the distance code */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1106:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, code, dtree); /* send the distance code */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1109:25: warning: implicit conversion changes signedness: 'const int' to 'unsigned int' [-Wsign-conversion]
dist -= base_dist[code];
˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:1110:30: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
send_bits(s, dist, extra); /* send the extra distance bits */
˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
trees.c:221:15: note: expanded from macro 'send_bits'
int val = value;\
^
trees.c:1110:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, dist, extra); /* send the extra distance bits */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1110:17: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_bits(s, dist, extra); /* send the extra distance bits */
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1120:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:224:44: note: expanded from macro 'send_bits'
s->bi_buf = (ush)val >> (Buf_size - s->bi_valid);\
˜ ^
trees.c:1120:5: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
send_code(s, END_BLOCK, ltree);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:168:33: note: expanded from macro 'send_code'
# define send_code(s, c, tree) send_bits(s, tree[c].Code, tree[c].Len)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
trees.c:225:20: note: expanded from macro 'send_bits'
s->bi_valid += len - Buf_size;\
^˜˜ ˜
trees.c:1242:21: warning: implicit conversion changes signedness: 'charf' (aka 'char') to 'Bytef' (aka 'unsigned char') [-Wsign-conversion]
put_byte(s, *buf++);
˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜
./deflate.h:275:57: note: expanded from macro 'put_byte'
#define put_byte(s, c) {s->pending_buf[s->pending++] = (c);}
^
59 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c uncertain.c -o uncertain.o
uncertain.c:116:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int iAA = floor(pAA+0.499999);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
uncertain.c:117:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int iAB = floor(pAB+0.499999);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
uncertain.c:118:13: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
int iBB = floor(pBB+0.499999);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c uncompr.c -o uncompr.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -c zutil.c -o zutil.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o snpStats.so Runcertain.o adler32.o bind.o compress.o count_gt.o covwin.o crc32.o deflate.o force_hom.o fst.o glm_test.o glm_test_R.o gzclose.o gzlib.o gzread.o gzwrite.o hash_index.o hphase.o imputation.o in.o infback.o inffast.o inflate.o inftrees.o input.o invert.o ipf.o ld.o misc.o mla.o mvphenotype.o outdata.o plink.o read_uncertain.o readped.o single_snp_tests.o snp_summary.o snpmpy.o solve_cubic.o structure.o switch.o tdt.o trees.o uncertain.o uncompr.o zutil.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/snpStats.buildbin-libdir/snpStats/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'snpStats'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (snpStats)
>>>>>>>
>>>>>>> FIXING LINKS FOR snpStats.buildbin-libdir/snpStats/libs//snpStats.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "snpStats.buildbin-libdir/snpStats/libs//snpStats.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "snpStats.buildbin-libdir/snpStats/libs//snpStats.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "snpStats.buildbin-libdir/snpStats/libs//snpStats.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "snpStats.buildbin-libdir/snpStats/libs//snpStats.so"