BioC 2.12: CHECK report for goseq on moscato2

Package: goseq

Version: 1.12.0

Command: rm -rf goseq.buildbin-libdir && mkdir goseq.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=goseq.buildbin-libdir goseq_1.12.0.tar.gz >goseq-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=goseq.buildbin-libdir --install="check:goseq-install.out" --force-multiarch --no-vignettes --timings goseq_1.12.0.tar.gz && mv goseq.buildbin-libdir/* goseq.Rcheck/ && rmdir goseq.buildbin-libdir

StartedAt: 2013-10-09 02:24:52 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 02:34:19 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 566.9 seconds

RetCode: 0

Status:  OK

CheckDir: goseq.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/goseq.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'goseq/DESCRIPTION' ... OK
* this is package 'goseq' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'goseq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [115s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
goseq     38.78   2.22   41.06
getgo     19.50   0.68   20.20
plotPWF   13.84   1.98   15.82
nullp     11.28   1.75   13.06
getlength  9.69   1.89   11.83
** running examples for arch 'x64' ... [140s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
goseq     49.58   2.44   52.12
getgo     29.33   1.39   30.73
nullp     12.51   1.35   13.87
plotPWF   11.72   1.48   13.22
getlength 11.35   1.82   13.20
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'goseq' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'goseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'goseq' as goseq_1.12.0.zip
* DONE (goseq)