flowQ 1.19.1
Mike Jiang
| Snapshot Date: 2013-03-17 17:01:25 -0700 (Sun, 17 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowQ | | Last Changed Rev: 74425 / Revision: 74490 | | Last Changed Date: 2013-03-15 15:17:05 -0700 (Fri, 15 Mar 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | WARNINGS | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* checking for file 'flowQ/DESCRIPTION' ... OK
* preparing 'flowQ':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from 'package:stats':
xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, as.data.frame,
cbind, colnames, duplicated, eval, get, intersect, lapply, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rep.int, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unlist
Loading required package: outliers
Loading required package: lattice
Loading required package: flowViz
Loading required package: flowCore
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-02)
Attaching package: 'flowCore'
The following object is masked from 'package:stats':
filter
The following object is masked from 'package:base':
ls
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: mvoutlier
Loading required package: compositions
Loading required package: rgl
Loading required package: tensorA
Attaching package: 'tensorA'
The following object is masked from 'package:base':
norm
Loading required package: energy
Loading required package: boot
Attaching package: 'boot'
The following object is masked from 'package:robustbase':
salinity
The following object is masked from 'package:lattice':
melanoma
Loading required package: MASS
Warning: replacing previous import 'plot' when loading 'graphics'
Welcome to compositions, a package for compositional data analysis.
Find an intro with "? compositions"
Attaching package: 'compositions'
The following object is masked from 'package:flowCore':
normalize
The following object is masked from 'package:stats':
cor, cov, dist, var
The following object is masked from 'package:base':
%*%, scale, scale.default
Loading required package: robCompositions
Loading required package: car
Loading required package: nnet
Attaching package: 'car'
The following object is masked from 'package:boot':
logit
Attaching package: 'robCompositions'
The following object is masked from 'package:compositions':
alr, clr, ilr
Loading required package: sgeostat
Loading required package: bioDist
Loading required package: KernSmooth
Loading required package: parody
Loading required package: tools
Loading required package: RColorBrewer
Loading required package: latticeExtra
Attaching package: 'latticeExtra'
The following object is masked from 'package:flowViz':
ecdfplot
Warning: replacing previous import 'sort' when loading 'flowCore'
Warning: replacing previous import 'as' when loading 'methods'
Using ImageMagic library at .
(version 6.7.3)
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp)[j] <- paste(dyes[j]) :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp)[j] <- paste(dyes[j]) :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp)[j] <- paste(dyes[j]) :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Warning in names(agTmp)[j] <- paste(dyes[j]) :
class 'aggregatorList' has no 'names' slot; assigning a names attribute will create an invalid object
Error: processing vignette 'DataQualityAssessment.Rnw' failed with diagnostics:
chunk 17 (label = Data Normalization)
Error in library(flowStats) : there is no package called 'flowStats'
Execution halted