BioC 2.12: CHECK report for cghMCR on george2

Package: cghMCR

Version: 1.18.0

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings cghMCR_1.18.0.tar.gz

StartedAt: 2013-10-09 00:46:36 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 00:50:31 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 235.7 seconds

RetCode: 0

Status:  OK

CheckDir: cghMCR.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/cghMCR.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cghMCR/DESCRIPTION’ ... OK
* this is package ‘cghMCR’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cghMCR’ can be installed ... [20s/22s] OK
* checking installed package size ... NOTE
  installed size is 98.1Mb
  sub-directories of 1Mb or more:
    sampleData  97.1Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [17s/18s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
mergeMCRProbes 5.897  0.024   6.013
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/cghMCR.Rcheck/00check.log’
for details.

* installing *source* package ‘cghMCR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cghMCR)

name	user	system	elapsed
SGOL-class	0.028	0.004	0.060
cghMCR-class	0.168	0.008	0.227
cghMCR	0.440	0.000	0.508
mergeMCRProbes	5.897	0.024	6.013
plot.DNAcopy	0.024	0.000	0.025