>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=affxparser.buildbin-libdir affxparser_1.32.0.tar.gz'
>>>>>>>
* installing *source* package 'affxparser' ...
** libs
rm -f fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o
In file included from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/CDFData.cpp:125:9: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
return GetUInt32FromGenericHdr(CDF_SETS_PARAM);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/CDFData.cpp:130:22: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
SetDataTypeId(type, cnt);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/calvin_files/data/src/CDFData.cpp:208:12: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
result = paramType.GetValueUInt32();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/CDFData.cpp:210:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
return result;
˜˜˜˜˜˜ ^˜˜˜˜˜
7 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o
In file included from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:31:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:31:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.h:31:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:24:
fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:47:32: warning: implicit conversion changes signedness: 'const u_int32_t' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
int GetExpos() const { return indexPos; }
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o
In file included from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:30:
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:30:
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:30:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:47:32: warning: implicit conversion changes signedness: 'const u_int32_t' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
int GetExpos() const { return indexPos; }
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:83:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
groupCnt = dgh.GetDataSetCnt();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:109:15: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
if (groupIdx < 0 || groupIdx >= groupCnt)
˜˜˜˜˜˜˜˜ ^ ˜
5 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:31:
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:31:
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.h:31:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o
In file included from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CELData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CELData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CELData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/data/src/CELData.cpp:26:
fusion_sdk/calvin_files/utils/src/FileUtils.h:86:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/calvin_files/data/src/CELData.cpp:985:14: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
s.erase(0, len);
˜ ^˜˜
fusion_sdk/calvin_files/data/src/CELData.cpp:1014:14: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
s.erase(0, len);
˜ ^˜˜
6 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp -o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:22:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:22:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:23:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CHPData.cpp -o fusion_sdk/calvin_files/data/src/CHPData.o
In file included from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:22:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:22:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:23:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp -o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:20:
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.h:29:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:20:
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.h:29:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:20:
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.h:30:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:342:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return dataSetInfo[dataType].metricColumns[col].GetLength();
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:354:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return dataSetInfo[dataType].metricColumns[colIndex].GetName();
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:803:17: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics.resize(ncols);
˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:806:11: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetName(ds->metricColumns[icol].GetName());
˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:806:43: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetName(ds->metricColumns[icol].GetName());
˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:807:29: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
switch (ds->metricColumns[icol].GetColumnType())
˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:813:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetValueInt8(val);
˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:821:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetValueUInt8(val);
˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:829:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetValueInt16(val);
˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:837:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetValueUInt16(val);
˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:845:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetValueInt32(val);
˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:853:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetValueUInt32(val);
˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:861:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetValueFloat(val);
˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:869:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetValueAscii(val);
˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:877:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
metrics[icol].SetValueText(val);
˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:1256:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
else if (dataType = CytoGenotypeCallMultiDataType)
˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:1256:21: note: place parentheses around the assignment to silence this warning
else if (dataType = CytoGenotypeCallMultiDataType)
^
( )
fusion_sdk/calvin_files/data/src/CHPMultiDataData.cpp:1256:21: note: use '==' to turn this assignment into an equality comparison
else if (dataType = CytoGenotypeCallMultiDataType)
^
==
19 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CHPTilingData.cpp -o fusion_sdk/calvin_files/data/src/CHPTilingData.o
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.h:23:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.h:23:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/CHPTilingData.cpp:166:35: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
entries = genericData.DataSet(0, index);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/CHPTilingData.cpp:220:42: warning: implicit conversion changes signedness: 'const int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
param.SetName( param.GetName().substr(len, param.GetName().length()-len));
˜˜˜˜˜ ^˜˜
fusion_sdk/calvin_files/data/src/CHPTilingData.cpp:220:72: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
param.SetName( param.GetName().substr(len, param.GetName().length()-len));
˜^˜˜
6 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.h:25:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h:25:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/ColumnInfo.cpp -o fusion_sdk/calvin_files/data/src/ColumnInfo.o
fusion_sdk/calvin_files/data/src/ColumnInfo.cpp:52:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
len = (totalSize - overhead) / sizeof(int16_t);
˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/calvin_files/data/src/ColumnInfo.cpp:55:36: warning: implicit conversion changes signedness: 'unsigned long' to 'int32_t' (aka 'int') [-Wsign-conversion]
len = (totalSize - overhead) / sizeof(int8_t);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/ColumnInfo.cpp:55:24: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
len = (totalSize - overhead) / sizeof(int8_t);
˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/calvin_files/data/src/ColumnInfo.cpp:60:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o
In file included from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:78:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if(dataSetHdrs[i].GetName() == p.GetName())
˜˜˜˜˜˜˜˜˜˜˜ ^
fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:80:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
dataSetHdrs[i] = p;
˜˜˜˜˜˜˜˜˜˜˜ ^
fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:88:21: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return dataSetHdrs[index];
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:93:21: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return dataSetHdrs[index];
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
6 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o
In file included from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:29:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/data/src/DataSet.cpp:26:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/calvin_files/data/src/DataSet.cpp:151:49: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
if (MapDataPosix(header.GetDataStartFilePos(), header.GetDataSize()) == false)
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:166:11: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
mapLen = header.GetDataSize();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:264:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
u_int32_t page_start = PAGE_TRUNC(start);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:48:31: note: expanded from macro 'PAGE_TRUNC'
#define PAGE_TRUNC(ptr) (ptr&(PAGE_MASK))
˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:44:19: note: expanded from macro 'PAGE_MASK'
#define PAGE_MASK ˜(PAGE_SIZE-1)
^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:273:21: warning: implicit conversion loses integer precision: 'long long' to 'u_int32_t' (aka 'unsigned int') [-Wshorten-64-to-32]
mapLen = fileLen - page_start;
˜ ˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:388:47: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
u_int32_t startByte = BytesPerRow()*rowStart + columnByteOffsets[col] + header.GetDataStartFilePos();
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:388:67: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
u_int32_t startByte = BytesPerRow()*rowStart + columnByteOffsets[col] + header.GetDataStartFilePos();
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:440:24: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
mapLen = BytesPerRow()*rowCount;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:441:36: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
mapStart = BytesPerRow()*rowStart + columnByteOffsets[col] + header.GetDataStartFilePos();
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:441:56: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
mapStart = BytesPerRow()*rowStart + columnByteOffsets[col] + header.GetDataStartFilePos();
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:578:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
values[index] = FileInput::ReadUInt8(instr);
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:583:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
values[index] = FileInput::ReadInt8(instr);
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:588:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
values[index] = FileInput::ReadUInt16(instr);
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:593:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
values[index] = FileInput::ReadInt16(instr);
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:598:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
values[index] = FileInput::ReadUInt32(instr);
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:603:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
values[index] = FileInput::ReadInt32(instr);
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:608:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
values[index] = FileInput::ReadFloat(instr);
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:613:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
values[index] = FileInput::ReadString8(instr);
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:618:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
values[index] = FileInput::ReadString16(instr);
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:787:72: warning: implicit conversion changes signedness: 'unsigned int' to 'int32_t' (aka 'int') [-Wsign-conversion]
return (mapLen+(mapStart-header.GetDataStartFilePos()))/BytesPerRow() - 1;
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:787:58: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'unsigned int' [-Wsign-conversion]
return (mapLen+(mapStart-header.GetDataStartFilePos()))/BytesPerRow() - 1;
˜^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:548:35: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
ClearAndSizeVector(values, endRow-startRow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:623:2: note: in instantiation of function template specialization 'affymetrix_calvin_io::DataSet::GetDataT<std::vector<unsigned char, std::allocator<unsigned char> > >' requested here
GetDataT(col, startRow, count, values);
^
fusion_sdk/calvin_files/data/src/DataSet.cpp:548:35: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
ClearAndSizeVector(values, endRow-startRow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:628:2: note: in instantiation of function template specialization 'affymetrix_calvin_io::DataSet::GetDataT<std::vector<signed char, std::allocator<signed char> > >' requested here
GetDataT(col, startRow, count, values);
^
fusion_sdk/calvin_files/data/src/DataSet.cpp:548:35: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
ClearAndSizeVector(values, endRow-startRow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:633:2: note: in instantiation of function template specialization 'affymetrix_calvin_io::DataSet::GetDataT<std::vector<unsigned short, std::allocator<unsigned short> > >' requested here
GetDataT(col, startRow, count, values);
^
fusion_sdk/calvin_files/data/src/DataSet.cpp:548:35: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
ClearAndSizeVector(values, endRow-startRow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:638:2: note: in instantiation of function template specialization 'affymetrix_calvin_io::DataSet::GetDataT<std::vector<short, std::allocator<short> > >' requested here
GetDataT(col, startRow, count, values);
^
fusion_sdk/calvin_files/data/src/DataSet.cpp:548:35: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
ClearAndSizeVector(values, endRow-startRow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:643:2: note: in instantiation of function template specialization 'affymetrix_calvin_io::DataSet::GetDataT<std::vector<unsigned int, std::allocator<unsigned int> > >' requested here
GetDataT(col, startRow, count, values);
^
fusion_sdk/calvin_files/data/src/DataSet.cpp:548:35: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
ClearAndSizeVector(values, endRow-startRow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:648:2: note: in instantiation of function template specialization 'affymetrix_calvin_io::DataSet::GetDataT<std::vector<int, std::allocator<int> > >' requested here
GetDataT(col, startRow, count, values);
^
fusion_sdk/calvin_files/data/src/DataSet.cpp:548:35: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
ClearAndSizeVector(values, endRow-startRow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:653:2: note: in instantiation of function template specialization 'affymetrix_calvin_io::DataSet::GetDataT<std::vector<float, std::allocator<float> > >' requested here
GetDataT(col, startRow, count, values);
^
fusion_sdk/calvin_files/data/src/DataSet.cpp:548:35: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
ClearAndSizeVector(values, endRow-startRow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:658:2: note: in instantiation of function template specialization 'affymetrix_calvin_io::DataSet::GetDataT<std::vector<std::basic_string<char>, std::allocator<std::basic_string<char> > > >' requested here
GetDataT(col, startRow, count, values);
^
fusion_sdk/calvin_files/data/src/DataSet.cpp:548:35: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
ClearAndSizeVector(values, endRow-startRow);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSet.cpp:663:2: note: in instantiation of function template specialization 'affymetrix_calvin_io::DataSet::GetDataT<std::vector<std::basic_string<wchar_t>, std::allocator<std::basic_string<wchar_t> > > >' requested here
GetDataT(col, startRow, count, values);
^
33 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:67:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'unsigned int' [-Wsign-conversion]
result += GetColumnInfo(i).GetSize();
˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:69:9: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
return result;
˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:156:21: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return columnTypes[index];
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
5 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o
In file included from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/calvin_files/data/src/FileHeader.cpp:67:23: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return dataGroupHdrs[index];
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/FileHeader.cpp:72:23: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return dataGroupHdrs[index];
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o
In file included from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/data/src/GenericData.cpp:27:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/calvin_files/data/src/GenericData.cpp:109:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
return header.GetDataGroupCnt();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/GenericData.cpp:132:45: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
DataGroupHeader* dch = FindDataGroupHeader(dataGroupIdx);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/GenericData.cpp:134:10: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
return dch->GetDataSetCnt();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/GenericData.cpp:149:10: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
return dch->GetDataSetCnt();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/GenericData.cpp:162:45: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
DataGroupHeader* dch = FindDataGroupHeader(dataGroupIdx);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/GenericData.cpp:212:45: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
DataGroupHeader* dch = FindDataGroupHeader(dataGroupIdx);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/GenericData.cpp:388:18: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare]
if (dataSetIdx >= 0 && (int32_t)dataSetIdx < dch->GetDataSetCnt())
˜˜˜˜˜˜˜˜˜˜ ^ ˜
fusion_sdk/calvin_files/data/src/GenericData.cpp:390:27: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
dph = &dch->GetDataSet(dataSetIdx);
˜˜˜ ^˜˜˜˜˜˜˜˜˜
12 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:21:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:112:40: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'mapped_type' (aka 'int') [-Wshorten-64-to-32]
paramNameIdxMap[entry.GetName()] = nameValParams.size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:118:39: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'mapped_type' (aka 'int') [-Wshorten-64-to-32]
paramNameIdxMap[entry.GetName()] = nameValParams.size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:125:23: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return nameValParams[index];
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:157:25: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return GenericDataHdrs[index];
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
6 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/data/src/CELData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/data/src/CELData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/data/src/CELData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:140:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
result = algParams.at(index).GetName();
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:438:34: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int32_t' (aka 'int') [-Wshorten-64-to-32]
calvinCel.GetIntensities(index, intensities.size(), intensities);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
5 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:22:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:22:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:23:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:30:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:30:
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:506:38: warning: implicit conversion changes signedness: 'const int8_t' (aka 'const signed char') to 'u_int8_t' (aka 'unsigned char') [-Wsign-conversion]
u_int8_t GetReason() const { return reason; }
˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:511:40: warning: implicit conversion changes signedness: 'u_int8_t' (aka 'unsigned char') to 'int8_t' (aka 'signed char') [-Wsign-conversion]
void SetReason(u_int8_t r) { reason = r; }
˜ ^
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:30:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:35:
fusion_sdk/file/CHPFileData.h:266:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetCols(int n) { m_Cols=n; }
˜^
fusion_sdk/file/CHPFileData.h:271:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetRows(int n) { m_Rows=n; }
˜^
fusion_sdk/file/CHPFileData.h:596:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
char GetCalledBase(int index) { return calledBases[index]; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:606:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeCalledBases(int size) { calledBases.resize(size); }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:612:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetCalledBase(int index, char call) { calledBases[index] = call; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:623:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
float GetScore(int index) { return scores[index]; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:633:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeScores(int size) { scores.resize(size); }
˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:639:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetScore(int index, float score) { scores[index] = score; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:650:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ForceCallType GetForceCall(int index) { return forceCalls[index]; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:660:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeForceCalls(int size) { forceCalls.resize(size); }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:666:64: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetForceCall(int index, ForceCallType call) { forceCalls[index] = call; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:677:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
BaseCallType GetOrigCall(int index) { return origCalls[index]; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:687:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeOrigCalls(int size) { origCalls.resize(size); }
˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:693:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetOrigCall(int index, BaseCallType call) { origCalls[index] = call; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:32:
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:29:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp:411:57: warning: implicit conversion changes signedness: 'char' to 'u_int8_t' (aka 'unsigned char') [-Wsign-conversion]
FusionForceCallType fusionType(f.position, f.call, f.reason);
˜˜˜˜˜˜˜˜˜˜ ˜˜^˜˜˜˜˜
21 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:29:
fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:47:32: warning: implicit conversion changes signedness: 'const u_int32_t' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
int GetExpos() const { return indexPos; }
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:25:
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:26:
fusion_sdk/calvin_files/utils/src/FileUtils.h:86:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:82:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return calvinData->GetArrayCols();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:95:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return calvinData->GetArrayRows();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:404:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return calvinProbe->GetListIndex();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:597:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return calvinGroup->GetNumLists();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:610:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return calvinGroup->GetNumCells();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:639:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return probeInfo.GetListIndex();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:655:50: warning: implicit conversion changes signedness: 'unsigned int' to 'int32_t' (aka 'int') [-Wsign-conversion]
calvinGroup->GetCell(calvinGroup->GetNumCells()-1, probeInfo);
˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:656:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return probeInfo.GetListIndex();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:809:33: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
calvinSet->GetGroupInformation(index, *calvinGroup);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:964:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return calvinSet->GetNumLists();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:977:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return calvinSet->GetNumGroups();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:990:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return calvinSet->GetNumCells();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:1016:10: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
return calvinSet->GetProbeSetNumber();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
19 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:24:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:30:
In file included from fusion_sdk/file/CELFileData.h:33:
fusion_sdk/file/FileIO.h:67:31: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
return ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8));
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:24:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:30:
fusion_sdk/file/CELFileData.h:120:75: warning: extra ';' inside a struct [-Wextra-semi]
unsigned char Pixels; /* \cond */ /* STRUCT_ALIGNMENT */ /*! \endcond */ ;
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:26:
fusion_sdk/calvin_files/utils/src/FileUtils.h:86:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:28:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:492:10: warning: implicit conversion loses integer precision: 'int64_t' (aka 'long long') to 'unsigned int' [-Wshorten-64-to-32]
return Fs::fileSize(filename);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
8 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:23:
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp:24:
fusion_sdk/calvin_files/utils/src/FileUtils.h:86:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
5 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp -o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:21:
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:506:38: warning: implicit conversion changes signedness: 'const int8_t' (aka 'const signed char') to 'u_int8_t' (aka 'unsigned char') [-Wsign-conversion]
u_int8_t GetReason() const { return reason; }
˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:511:40: warning: implicit conversion changes signedness: 'u_int8_t' (aka 'unsigned char') to 'int8_t' (aka 'signed char') [-Wsign-conversion]
void SetReason(u_int8_t r) { reason = r; }
˜ ^
In file included from fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:23:
fusion_sdk/file/CHPFileData.h:266:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetCols(int n) { m_Cols=n; }
˜^
fusion_sdk/file/CHPFileData.h:271:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetRows(int n) { m_Rows=n; }
˜^
fusion_sdk/file/CHPFileData.h:596:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
char GetCalledBase(int index) { return calledBases[index]; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:606:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeCalledBases(int size) { calledBases.resize(size); }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:612:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetCalledBase(int index, char call) { calledBases[index] = call; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:623:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
float GetScore(int index) { return scores[index]; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:633:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeScores(int size) { scores.resize(size); }
˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:639:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetScore(int index, float score) { scores[index] = score; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:650:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ForceCallType GetForceCall(int index) { return forceCalls[index]; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:660:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeForceCalls(int size) { forceCalls.resize(size); }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:666:64: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetForceCall(int index, ForceCallType call) { forceCalls[index] = call; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:677:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
BaseCallType GetOrigCall(int index) { return origCalls[index]; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:687:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeOrigCalls(int size) { origCalls.resize(size); }
˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:693:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetOrigCall(int index, BaseCallType call) { origCalls[index] = call; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:425:11: warning: implicit conversion changes signedness: 'u_int8_t' (aka 'unsigned char') to 'int8_t' (aka 'signed char') [-Wsign-conversion]
reason = r;
˜ ^
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:491:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return calledBases[index];
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:502:21: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
calledBases.resize(size);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:507:14: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
calledBases[index] = call;
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:522:16: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return scores[index];
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:532:16: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
scores.resize(size);
˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:537:9: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
scores[index] = score;
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:552:20: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return forceCalls[index];
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:562:20: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
forceCalls.resize(size);
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:567:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
forceCalls[index] = call;
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:582:19: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return origCalls[index];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:592:19: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
origCalls.resize(size);
˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp:597:12: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
origCalls[index] = call;
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
29 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:30:
In file included from fusion_sdk/file/CELFileData.h:33:
fusion_sdk/file/FileIO.h:67:31: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
return ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8));
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:30:
fusion_sdk/file/CELFileData.h:120:75: warning: extra ';' inside a struct [-Wextra-semi]
unsigned char Pixels; /* \cond */ /* STRUCT_ALIGNMENT */ /*! \endcond */ ;
^
5 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:28:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:22:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:28:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:22:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:28:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:23:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:30:
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:506:38: warning: implicit conversion changes signedness: 'const int8_t' (aka 'const signed char') to 'u_int8_t' (aka 'unsigned char') [-Wsign-conversion]
u_int8_t GetReason() const { return reason; }
˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:511:40: warning: implicit conversion changes signedness: 'u_int8_t' (aka 'unsigned char') to 'int8_t' (aka 'signed char') [-Wsign-conversion]
void SetReason(u_int8_t r) { reason = r; }
˜ ^
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:35:
fusion_sdk/file/CHPFileData.h:266:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetCols(int n) { m_Cols=n; }
˜^
fusion_sdk/file/CHPFileData.h:271:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetRows(int n) { m_Rows=n; }
˜^
fusion_sdk/file/CHPFileData.h:596:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
char GetCalledBase(int index) { return calledBases[index]; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:606:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeCalledBases(int size) { calledBases.resize(size); }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:612:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetCalledBase(int index, char call) { calledBases[index] = call; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:623:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
float GetScore(int index) { return scores[index]; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:633:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeScores(int size) { scores.resize(size); }
˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:639:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetScore(int index, float score) { scores[index] = score; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:650:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ForceCallType GetForceCall(int index) { return forceCalls[index]; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:660:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeForceCalls(int size) { forceCalls.resize(size); }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:666:64: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetForceCall(int index, ForceCallType call) { forceCalls[index] = call; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:677:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
BaseCallType GetOrigCall(int index) { return origCalls[index]; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:687:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeOrigCalls(int size) { origCalls.resize(size); }
˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:693:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetOrigCall(int index, BaseCallType call) { origCalls[index] = call; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
19 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:28:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:29:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:30:
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:506:38: warning: implicit conversion changes signedness: 'const int8_t' (aka 'const signed char') to 'u_int8_t' (aka 'unsigned char') [-Wsign-conversion]
u_int8_t GetReason() const { return reason; }
˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:511:40: warning: implicit conversion changes signedness: 'u_int8_t' (aka 'unsigned char') to 'int8_t' (aka 'signed char') [-Wsign-conversion]
void SetReason(u_int8_t r) { reason = r; }
˜ ^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:29:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:35:
fusion_sdk/file/CHPFileData.h:266:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetCols(int n) { m_Cols=n; }
˜^
fusion_sdk/file/CHPFileData.h:271:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetRows(int n) { m_Rows=n; }
˜^
fusion_sdk/file/CHPFileData.h:596:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
char GetCalledBase(int index) { return calledBases[index]; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:606:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeCalledBases(int size) { calledBases.resize(size); }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:612:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetCalledBase(int index, char call) { calledBases[index] = call; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:623:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
float GetScore(int index) { return scores[index]; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:633:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeScores(int size) { scores.resize(size); }
˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:639:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetScore(int index, float score) { scores[index] = score; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:650:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ForceCallType GetForceCall(int index) { return forceCalls[index]; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:660:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeForceCalls(int size) { forceCalls.resize(size); }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:666:64: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetForceCall(int index, ForceCallType call) { forceCalls[index] = call; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:677:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
BaseCallType GetOrigCall(int index) { return origCalls[index]; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:687:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeOrigCalls(int size) { origCalls.resize(size); }
˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:693:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetOrigCall(int index, BaseCallType call) { origCalls[index] = call; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:23:
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.h:32:
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:29:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.cpp:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
21 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:22:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:22:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:22:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:72:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
calls.resize(nchps);
˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:73:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
confidences.resize(nchps);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:78:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vector<int> snpIndicies(nsnps);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:81:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
snpIndicies[isnp] = snpNameIndexMap[snps[isnp]];
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:81:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
snpIndicies[isnp] = snpNameIndexMap[snps[isnp]];
˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:90:51: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
chp = FusionCHPDataReg::Read(chpFileNames[ichp]);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:94:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
calls[ichp].clear();
˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:95:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
confidences[ichp].clear();
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:103:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
calls[ichp].resize(nsnps);
˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:103:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
calls[ichp].resize(nsnps);
˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:104:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
confidences[ichp].resize(nsnps);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:104:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
confidences[ichp].resize(nsnps);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:107:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
calls[ichp][isnp] = mchp->GetGenoCall(GenotypeMultiDataType, snpIndicies[isnp]);
˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:107:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
calls[ichp][isnp] = mchp->GetGenoCall(GenotypeMultiDataType, snpIndicies[isnp]);
˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:107:86: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
calls[ichp][isnp] = mchp->GetGenoCall(GenotypeMultiDataType, snpIndicies[isnp]);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:108:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
confidences[ichp][isnp] = mchp->GetGenoConfidence(GenotypeMultiDataType, snpIndicies[isnp]);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:108:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
confidences[ichp][isnp] = mchp->GetGenoConfidence(GenotypeMultiDataType, snpIndicies[isnp]);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.cpp:108:98: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
confidences[ichp][isnp] = mchp->GetGenoConfidence(GenotypeMultiDataType, snpIndicies[isnp]);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
21 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.h:29:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.h:29:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.h:30:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.cpp:23:
In file included from fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.h:23:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.h:23:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.cpp:23:
In file included from fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.h:25:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.cpp:24:
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.h:25:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.cpp:23:
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp:21:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h:25:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.cpp:23:
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:137:50: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
: Name(name), Type(mimeType), Value(mimeValue, mimeValueSize)
˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:173:13: warning: implicit conversion changes signedness: 'int8_t' (aka 'signed char') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
IntToValue(value, Int8MIMEType);
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:193:13: warning: implicit conversion changes signedness: 'int16_t' (aka 'short') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
IntToValue(value, Int16MIMEType);
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:213:13: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
IntToValue(value, Int32MIMEType);
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:230:18: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
int32_t ival = ValueToInt(FloatMIMEType);
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:246:17: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
IntToValue(pun.v_int32, FloatMIMEType);
˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜˜˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:331:19: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
for(int32_t i = len; i < reserve; ++i)
˜ ^˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:334:23: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
Value.SetValue(buf, reserve);
˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:511:31: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
Value = MIMEValue(mimeValue, mimeValueSize);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:513:45: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
defaultValue = MIMEValue(defaultMimeValue, defaultMimeValueSize);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:566:20: warning: implicit conversion changes signedness: 'int8_t' (aka 'signed char') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
IntToDefaultValue(value, Int8MIMEType);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:588:20: warning: implicit conversion changes signedness: 'int16_t' (aka 'short') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
IntToDefaultValue(value, Int16MIMEType);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:610:20: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
IntToDefaultValue(value, Int32MIMEType);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:628:18: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
int32_t ival = DefaultValueToInt(FloatMIMEType);
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:645:24: warning: implicit conversion changes signedness: 'int' to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
IntToDefaultValue(pun.v_int32, FloatMIMEType);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜˜˜˜˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:728:19: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
for(int32_t i = len; i < reserve; ++i)
˜ ^˜˜
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:731:30: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
defaultValue.SetValue(buf, reserve);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
17 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:29:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:23:
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CELData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CELData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CELData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:23:
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:22:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:22:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:28:
In file included from fusion_sdk/calvin_files/data/src/CHPData.h:24:
In file included from fusion_sdk/calvin_files/data/src/CHPBackgroundZone.h:23:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPFileReader.h:29:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o
In file included from fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.h:29:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.h:29:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPMultiDataData.h:30:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o
In file included from fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.h:23:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.h:23:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPTilingData.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationData.h:25:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h:24:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.h:25:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:126:31: warning: implicit conversion loses integer precision: 'streamoff' (aka 'long long') to 'u_int32_t' (aka 'unsigned int') [-Wshorten-64-to-32]
grpHdr.SetHeaderStartFilePos(fileStream.tellg());
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o
In file included from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:120:28: warning: implicit conversion loses integer precision: 'streamoff' (aka 'long long') to 'u_int32_t' (aka 'unsigned int') [-Wshorten-64-to-32]
dsh.SetHeaderStartFilePos(fileStream.tellg());
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
4 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:58:9: warning: implicit conversion loses integer precision: 'streamsize' (aka 'long') to 'int32_t' (aka 'int') [-Wshorten-64-to-32]
return fileStream.gcount();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:27:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:66:29: warning: implicit conversion changes signedness: 'int8_t' (aka 'signed char') to 'u_int8_t' (aka 'unsigned char') [-Wsign-conversion]
u_int8_t fileMagicNumber = FileInput::ReadInt8(fileStream);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:80:31: warning: implicit conversion changes signedness: 'int8_t' (aka 'signed char') to 'u_int8_t' (aka 'unsigned char') [-Wsign-conversion]
u_int8_t fileVersionNumber = FileInput::ReadInt8(fileStream);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:94:26: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
header.SetNumDataGroups(dataGroupCnt);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
5 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:73:8: warning: operand of ? changes signedness: '__uint16_t' (aka 'unsigned short') to 'int16_t' (aka 'short') [-Wsign-conversion]
val = ntohs(val);
˜ ^˜˜˜˜˜˜˜˜˜
/usr/include/sys/_endian.h:126:18: note: expanded from macro 'ntohs'
#define ntohs(x) __DARWIN_OSSwapInt16(x)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:75:32: note: expanded from macro '__DARWIN_OSSwapInt16'
(__builtin_constant_p(x) ? __DARWIN_OSSwapConstInt16(x) : _OSSwapInt16(x))
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:44:6: note: expanded from macro '__DARWIN_OSSwapConstInt16'
((__uint16_t)((((__uint16_t)(x) & 0xff00) >> 8) | \
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:73:8: warning: operand of ? changes signedness: '__uint16_t' (aka 'unsigned short') to 'int16_t' (aka 'short') [-Wsign-conversion]
val = ntohs(val);
˜ ^˜˜˜˜˜˜˜˜˜
/usr/include/sys/_endian.h:126:18: note: expanded from macro 'ntohs'
#define ntohs(x) __DARWIN_OSSwapInt16(x)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:75:63: note: expanded from macro '__DARWIN_OSSwapInt16'
(__builtin_constant_p(x) ? __DARWIN_OSSwapConstInt16(x) : _OSSwapInt16(x))
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:84:8: warning: operand of ? changes signedness: '__uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
val = ntohl(val);
˜ ^˜˜˜˜˜˜˜˜˜
/usr/include/sys/_endian.h:129:18: note: expanded from macro 'ntohl'
#define ntohl(x) __DARWIN_OSSwapInt32(x)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:78:32: note: expanded from macro '__DARWIN_OSSwapInt32'
(__builtin_constant_p(x) ? __DARWIN_OSSwapConstInt32(x) : _OSSwapInt32(x))
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:48:6: note: expanded from macro '__DARWIN_OSSwapConstInt32'
((__uint32_t)((((__uint32_t)(x) & 0xff000000) >> 24) | \
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:84:8: warning: operand of ? changes signedness: '__uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
val = ntohl(val);
˜ ^˜˜˜˜˜˜˜˜˜
/usr/include/sys/_endian.h:129:18: note: expanded from macro 'ntohl'
#define ntohl(x) __DARWIN_OSSwapInt32(x)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:78:63: note: expanded from macro '__DARWIN_OSSwapInt32'
(__builtin_constant_p(x) ? __DARWIN_OSSwapConstInt32(x) : _OSSwapInt32(x))
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:127:15: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'unsigned int' [-Wsign-conversion]
pun.v_uint32=ReadInt32(instr);
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:232:8: warning: operand of ? changes signedness: '__uint16_t' (aka 'unsigned short') to 'int16_t' (aka 'short') [-Wsign-conversion]
val = ntohs(val);
˜ ^˜˜˜˜˜˜˜˜˜
/usr/include/sys/_endian.h:126:18: note: expanded from macro 'ntohs'
#define ntohs(x) __DARWIN_OSSwapInt16(x)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:75:32: note: expanded from macro '__DARWIN_OSSwapInt16'
(__builtin_constant_p(x) ? __DARWIN_OSSwapConstInt16(x) : _OSSwapInt16(x))
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:44:6: note: expanded from macro '__DARWIN_OSSwapConstInt16'
((__uint16_t)((((__uint16_t)(x) & 0xff00) >> 8) | \
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:232:8: warning: operand of ? changes signedness: '__uint16_t' (aka 'unsigned short') to 'int16_t' (aka 'short') [-Wsign-conversion]
val = ntohs(val);
˜ ^˜˜˜˜˜˜˜˜˜
/usr/include/sys/_endian.h:126:18: note: expanded from macro 'ntohs'
#define ntohs(x) __DARWIN_OSSwapInt16(x)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:75:63: note: expanded from macro '__DARWIN_OSSwapInt16'
(__builtin_constant_p(x) ? __DARWIN_OSSwapConstInt16(x) : _OSSwapInt16(x))
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:243:8: warning: operand of ? changes signedness: '__uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
val = ntohl(val);
˜ ^˜˜˜˜˜˜˜˜˜
/usr/include/sys/_endian.h:129:18: note: expanded from macro 'ntohl'
#define ntohl(x) __DARWIN_OSSwapInt32(x)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:78:32: note: expanded from macro '__DARWIN_OSSwapInt32'
(__builtin_constant_p(x) ? __DARWIN_OSSwapConstInt32(x) : _OSSwapInt32(x))
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:48:6: note: expanded from macro '__DARWIN_OSSwapConstInt32'
((__uint32_t)((((__uint32_t)(x) & 0xff000000) >> 24) | \
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:243:8: warning: operand of ? changes signedness: '__uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
val = ntohl(val);
˜ ^˜˜˜˜˜˜˜˜˜
/usr/include/sys/_endian.h:129:18: note: expanded from macro 'ntohl'
#define ntohl(x) __DARWIN_OSSwapInt32(x)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
/usr/include/libkern/_OSByteOrder.h:78:63: note: expanded from macro '__DARWIN_OSSwapInt32'
(__builtin_constant_p(x) ? __DARWIN_OSSwapConstInt32(x) : _OSSwapInt32(x))
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:282:30: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'unsigned long' [-Wsign-conversion]
instr += (sizeof(u_int16_t)*len);
˜^˜˜
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:383:21: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
memcpy(buf, instr, len);
˜˜˜˜˜˜ ^˜˜
11 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o
In file included from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:27:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
2 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:27:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:28:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:90:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:28:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
5 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o
In file included from fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:24:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:26:
fusion_sdk/calvin_files/utils/src/checksum.h:49:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
2 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o
fusion_sdk/calvin_files/utils/src/DateTime.cpp:163:11: warning: comparison of constant 18446744073709551615 with expression of type 'int32_t' (aka 'int') is always false [-Wtautological-constant-out-of-range-compare]
if (posT == std::wstring::npos)
˜˜˜˜ ^ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/utils/src/DateTime.cpp:169:38: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
std::wstring date = value.substr(0, posT);
˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/utils/src/DateTime.cpp:175:11: warning: comparison of constant 18446744073709551615 with expression of type 'int32_t' (aka 'int') is always true [-Wtautological-constant-out-of-range-compare]
if (posZ != std::wstring::npos)
˜˜˜˜ ^ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/calvin_files/utils/src/DateTime.cpp:183:26: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
value = value.substr(0,posZ); // remove the ZULU specifier
˜˜˜˜˜ ^˜˜˜
fusion_sdk/calvin_files/utils/src/DateTime.cpp:186:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
std::wstring time = value.substr(posT+1);
˜˜˜˜˜ ˜˜˜˜^˜
fusion_sdk/calvin_files/utils/src/DateTime.cpp:240:22: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
date = FormatDate(y, m, d);
˜˜˜˜˜˜˜˜˜˜ ^
fusion_sdk/calvin_files/utils/src/DateTime.cpp:240:25: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
date = FormatDate(y, m, d);
˜˜˜˜˜˜˜˜˜˜ ^
fusion_sdk/calvin_files/utils/src/DateTime.cpp:240:28: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'u_int32_t' (aka 'unsigned int') [-Wsign-conversion]
date = FormatDate(y, m, d);
˜˜˜˜˜˜˜˜˜˜ ^
8 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o
In file included from fusion_sdk/calvin_files/utils/src/FileUtils.cpp:24:
fusion_sdk/calvin_files/utils/src/FileUtils.h:86:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/calvin_files/utils/src/FileUtils.cpp:26:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/calvin_files/utils/src/FileUtils.cpp:78:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o
In file included from fusion_sdk/calvin_files/utils/src/checksum.cpp:21:
fusion_sdk/calvin_files/utils/src/checksum.h:49:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o
In file included from fusion_sdk/file/BPMAPFileData.cpp:21:
fusion_sdk/file/FileIO.h:67:31: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
return ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8));
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:125:24: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
munmap(m_lpFileMap, m_MapLen);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:302:22: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
m_NumberSequences = uval;
˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:306:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems.resize(m_NumberSequences);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:309:24: warning: implicit conversion loses integer precision: 'streamoff' (aka 'long long') to 'int' [-Wshorten-64-to-32]
m_DataStartPosition = instr.tellg();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:341:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ReadUIntLenString_N(instr, m_SequenceItems[iSeq].m_Name);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:346:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_ProbePairs = uval;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:346:41: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
m_SequenceItems[iSeq].m_ProbePairs = uval;
˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:348:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_HitStartPosition = uval;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:348:47: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
m_SequenceItems[iSeq].m_HitStartPosition = uval;
˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:352:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_NumberHits = uval;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:352:40: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
m_SequenceItems[iSeq].m_NumberHits = uval;
˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:356:47: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ReadUIntLenString_N(instr, m_SequenceItems[iSeq].m_GroupName);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:357:47: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ReadUIntLenString_N(instr, m_SequenceItems[iSeq].m_SeqVersion);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:360:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_Parameters.resize(uval);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:363:48: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ReadUIntLenString_N(instr, m_SequenceItems[iSeq].m_Parameters[iParam].Tag);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:363:67: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ReadUIntLenString_N(instr, m_SequenceItems[iSeq].m_Parameters[iParam].Tag);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:364:48: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ReadUIntLenString_N(instr, m_SequenceItems[iSeq].m_Parameters[iParam].Value);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:364:67: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ReadUIntLenString_N(instr, m_SequenceItems[iSeq].m_Parameters[iParam].Value);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:378:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
instr.seekg(m_SequenceItems[iSeq].m_HitStartPosition);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:380:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_Number = uval;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:380:38: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
m_SequenceItems[iSeq].m_Number = uval;
˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:384:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_Number = uval;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:384:38: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
m_SequenceItems[iSeq].m_Number = uval;
˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:385:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_HitStartPosition = instr.tellg();
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:425:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int hitSize=(m_SequenceItems[iSeq].m_ProbePairs == PM_MM ? HIT_ITEM_SIZE_WITH_PROBE_PAIRS : HIT_ITEM_SIZE_WITH_PM_ONLY);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:427:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_pHits = NULL;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:428:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int offset = m_SequenceItems[iSeq].m_NumberHits * hitSize;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:509:27: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
m_lpFileMap = mmap(NULL, m_MapLen, PROT_READ, MAP_SHARED, fileno(m_fp), 0);
˜˜˜˜ ^˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:527:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_bMapped = true;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:528:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_lpData = m_lpData + m_SequenceItems[iSeq].m_HitStartPosition;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:528:63: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_SequenceItems[iSeq].m_lpData = m_lpData + m_SequenceItems[iSeq].m_HitStartPosition;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:373:7: warning: unused variable 'probeOut' [-Wunused-variable]
char probeOut[probeBufSize]="";
^
fusion_sdk/file/BPMAPFileData.cpp:372:16: warning: unused variable 'probeIn' [-Wunused-variable]
unsigned char probeIn[PROBE_STORAGE_BUFFER_LENGTH]="";
^
fusion_sdk/file/BPMAPFileData.cpp:385:48: warning: implicit conversion loses integer precision: 'streamoff' (aka 'long long') to 'int' [-Wshorten-64-to-32]
m_SequenceItems[iSeq].m_HitStartPosition = instr.tellg();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:505:17: warning: implicit conversion loses integer precision: 'off_t' (aka 'long long') to 'int' [-Wshorten-64-to-32]
m_MapLen = st.st_size;
˜ ˜˜˜^˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:540:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
seq.MakeShallowCopy(m_SequenceItems[index]);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:586:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
hit = (*m_pHits)[index];
˜ ^˜˜˜˜
fusion_sdk/file/BPMAPFileData.cpp:641:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return m_Parameters[index];
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
39 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/file/BPMAPFileWriter.cpp -o fusion_sdk/file/BPMAPFileWriter.o
In file included from fusion_sdk/file/BPMAPFileWriter.cpp:22:
fusion_sdk/file/FileIO.h:67:31: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
return ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8));
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileWriter.cpp:220:55: warning: implicit conversion loses integer precision: 'unsigned int' to 'char' [-Wconversion]
packedSequence[i] = ((packedSequence[i] << 2) | base);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜
fusion_sdk/file/BPMAPFileWriter.cpp:220:49: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
packedSequence[i] = ((packedSequence[i] << 2) | base);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜ ˜
fusion_sdk/file/BPMAPFileWriter.cpp:226:45: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
packedSequence[i] = packedSequence[i] << 2*(4-k);
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileWriter.cpp:301:21: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
hit.ProbeLength = (int)sequence.size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileWriter.cpp:626:29: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
WriteUInt32_N(of, (*i).m_ProbePairsValue);// 2.3
˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileWriter.cpp:665:29: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
WriteUInt32_N(of, (*i).m_HitStartPosition); // 2.4 fixup
˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/BPMAPFileWriter.cpp:642:32: warning: implicit conversion loses integer precision: 'streamoff' (aka 'long long') to 'int' [-Wshorten-64-to-32]
(*i).m_HitStartPosition = of.tellp();
˜ ^˜˜˜˜˜˜˜˜˜
8 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o
In file included from fusion_sdk/file/CDFFileData.cpp:23:
fusion_sdk/file/FileIO.h:67:31: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
return ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8));
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:148:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info = (*m_pCells)[cell_index];
˜ ^˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:191:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info = (*m_pCells)[index];;
˜ ^˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:235:39: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info.MakeShallowCopy((*m_pGroups)[index]);
˜ ^˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:262:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return m_ProbeSetNames[index];
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:269:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetNames.resize(size);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CDFFileData.cpp:276:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetNames[index] = name;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:288:9: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
seekg(loc, std::ios::beg);
˜˜˜˜˜ ^˜˜
fusion_sdk/file/CDFFileData.cpp:469:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return m_ProbeSets[index].GetProbeSetType();
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:476:40: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
i_pos=(uint32_t) probeSetIndexPos + (index*sizeof(uint32_t));
^˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:493:42: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info.MakeShallowCopy(m_ProbeSets[index]);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:507:43: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
i_pos = (uint32_t)probeSetIndexPos + (index*sizeof(uint32_t));
^˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:515:24: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
m_probeSetIndex_last=index;
˜^˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:540:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info.m_Groups.resize(info.m_NumGroups);
˜˜˜˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:544:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
pBlk = &info.m_Groups[j];
˜˜˜˜ ^
fusion_sdk/file/CDFFileData.cpp:578:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
pBlk->m_Cells.resize(pBlk->m_NumCells);
˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:582:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
pCell = &pBlk->m_Cells[k];
˜˜˜˜ ^
fusion_sdk/file/CDFFileData.cpp:594:34: warning: implicit conversion changes signedness: 'uint8_t' (aka 'unsigned char') to 'char' [-Wsign-conversion]
pCell->m_PBase = ucval;
˜ ^˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:596:34: warning: implicit conversion changes signedness: 'uint8_t' (aka 'unsigned char') to 'char' [-Wsign-conversion]
pCell->m_TBase = ucval;
˜ ^˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:634:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info.MakeShallowCopy(m_QCProbeSets[index]);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:638:46: warning: implicit conversion changes signedness: 'unsigned long' to 'int32_t' (aka 'int') [-Wsign-conversion]
int32_t pos = (int32_t)qcSetIndexPos + (index*sizeof(int32_t));
˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:638:23: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'unsigned long' [-Wsign-conversion]
int32_t pos = (int32_t)qcSetIndexPos + (index*sizeof(int32_t));
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/file/CDFFileData.cpp:638:49: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int32_t pos = (int32_t)qcSetIndexPos + (index*sizeof(int32_t));
^˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:639:15: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
seekg(pos, std::ios::beg);
˜˜˜˜˜ ^˜˜
fusion_sdk/file/CDFFileData.cpp:641:15: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
seekg(pos, std::ios::beg);
˜˜˜˜˜ ^˜˜
fusion_sdk/file/CDFFileData.cpp:653:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info.m_Cells.resize(info.m_NumCells);
˜˜˜˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:660:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info.m_Cells[j].m_X = usval;
˜˜˜˜ ^
fusion_sdk/file/CDFFileData.cpp:663:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info.m_Cells[j].m_Y = usval;
˜˜˜˜ ^
fusion_sdk/file/CDFFileData.cpp:666:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info.m_Cells[j].m_PLen = ucval;
˜˜˜˜ ^
fusion_sdk/file/CDFFileData.cpp:669:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info.m_Cells[j].m_PMProbe = ucval;
˜˜˜˜ ^
fusion_sdk/file/CDFFileData.cpp:672:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
info.m_Cells[j].m_Background = ucval;
˜˜˜˜ ^
fusion_sdk/file/CDFFileData.cpp:796:37: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
seekg(MAX_PROBE_SET_NAME_LENGTH * m_Header.m_NumProbeSets, std::ios::cur);
˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:801:20: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
seekg(m_Header.m_NumQCProbeSets * sizeof(uint32_t), std::ios::cur);
˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/file/CDFFileData.cpp:908:23: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
m_Header.m_Rows = atoi(subStr);
˜ ^˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:911:23: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
m_Header.m_Cols = atoi(subStr);
˜ ^˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:940:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_QCProbeSets.resize(m_Header.m_NumQCProbeSets);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:945:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
pQCProbeSet = &m_QCProbeSets[iQCProbeSet];
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:950:41: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
pQCProbeSet->m_QCProbeSetType = atoi( subStr);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:961:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
pQCProbeSet->m_Cells.resize(pQCProbeSet->m_NumCells);
˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:964:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
pQCCell = &pQCProbeSet->m_Cells[iqccell];
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:974:28: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
pQCCell->m_X = xqc;
˜ ^˜˜
fusion_sdk/file/CDFFileData.cpp:975:28: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
pQCCell->m_Y = yqc;
˜ ^˜˜
fusion_sdk/file/CDFFileData.cpp:976:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
pQCCell->m_PLen = plenqc;
˜ ^˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:986:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSets.resize(m_Header.m_NumProbeSets);
˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:1002:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
pProbeSet = &m_ProbeSets[iProbeSet];
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:1009:30: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
pProbeSet->m_Direction = atoi(subStr);
˜ ^˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:1015:36: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
pProbeSet->m_NumCellsPerList = NumCellsPerList;
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:1110:70: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
pProbeSet->m_NumCellsPerList = pProbeSet->m_NumCells / pProbeSet->m_NumLists;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:1139:43: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
pProbeSet->m_Groups.resize(pProbeSet->m_NumGroups);
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:1142:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
pBlk = &pProbeSet->m_Groups[iGroup];
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:1198:33: warning: implicit conversion loses integer precision: 'int' to 'unsigned char' [-Wconversion]
pBlk->m_Direction = atoi(subStr);
˜ ^˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:1206:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
pBlk->m_Cells.resize(pBlk->m_NumCells);
˜˜˜˜ ˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:1255:24: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
cell.m_X = x;
˜ ^
fusion_sdk/file/CDFFileData.cpp:1256:24: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
cell.m_Y = y;
˜ ^
fusion_sdk/file/CDFFileData.cpp:1260:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
cellIndex = (iCell / pProbeSet->m_NumCellsPerList) * pProbeSet->m_NumCellsPerList;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CDFFileData.cpp:1268:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
cellIndex = (iCell / pProbeSet->m_NumCellsPerList) * pProbeSet->m_NumCellsPerList;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
56 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o
In file included from fusion_sdk/file/CELFileData.cpp:21:
In file included from fusion_sdk/file/CELFileData.h:33:
fusion_sdk/file/FileIO.h:67:31: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
return ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8));
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/file/CELFileData.cpp:21:
fusion_sdk/file/CELFileData.h:120:75: warning: extra ';' inside a struct [-Wextra-semi]
unsigned char Pixels; /* \cond */ /* STRUCT_ALIGNMENT */ /*! \endcond */ ;
^
fusion_sdk/file/CELFileData.cpp:323:42: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(str, pInfo + 10, pEnd - pInfo - 10);
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
fusion_sdk/file/CELFileData.cpp:358:30: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(str, pInfo, pEnd - pInfo);
˜˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:384:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ((m_Params.at(i) == ':') || (m_Params.at(i) == '='))
˜˜˜˜˜˜˜˜ ^
fusion_sdk/file/CELFileData.cpp:384:48: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ((m_Params.at(i) == ':') || (m_Params.at(i) == '='))
˜˜˜˜˜˜˜˜ ^
fusion_sdk/file/CELFileData.cpp:386:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
tag = m_Params.substr(iStart, (iEnd - iStart + 1));
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:386:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
tag = m_Params.substr(iStart, (iEnd - iStart + 1));
˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
fusion_sdk/file/CELFileData.cpp:390:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
else if ((m_Params.at(i) == ';') || (m_Params.at(i) == ' '))
˜˜˜˜˜˜˜˜ ^
fusion_sdk/file/CELFileData.cpp:390:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
else if ((m_Params.at(i) == ';') || (m_Params.at(i) == ' '))
˜˜˜˜˜˜˜˜ ^
fusion_sdk/file/CELFileData.cpp:392:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
value = m_Params.substr(iStart, (iEnd - iStart + 1));
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:392:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
value = m_Params.substr(iStart, (iEnd - iStart + 1));
˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
fusion_sdk/file/CELFileData.cpp:400:27: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
value = m_Params.substr(iStart, (iEnd - iStart + 2));
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:400:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
value = m_Params.substr(iStart, (iEnd - iStart + 2));
˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜
fusion_sdk/file/CELFileData.cpp:708:9: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
return lSize;
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CELFileData.cpp:706:14: warning: implicit conversion loses integer precision: 'off_t' (aka 'long long') to 'int32_t' (aka 'int') [-Wshorten-64-to-32]
lSize = st.st_size;
˜ ˜˜˜^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1026:35: warning: implicit conversion changes signedness: 'unsigned int' to 'int32_t' (aka 'int') [-Wsign-conversion]
int32_t datasize = GetFileSize()-iHeaderBytes;
˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1026:36: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
int32_t datasize = GetFileSize()-iHeaderBytes;
˜^˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1028:32: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
size_t read=fread(m_lpData,1,datasize,m_File);
˜˜˜˜˜ ^˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1049:40: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
int iOffset = m_HeaderData.GetCells() * (FLOAT_SIZE + FLOAT_SIZE + SHORT_SIZE);
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1049:16: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int iOffset = m_HeaderData.GetCells() * (FLOAT_SIZE + FLOAT_SIZE + SHORT_SIZE);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1055:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
x = ((int16_t)MmGetUInt16_I((uint16_t*)(m_lpData + iOffset + iCell * 2 * SHORT_SIZE)));
˜˜˜˜˜˜^˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1057:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
y = ((int16_t)MmGetUInt16_I((uint16_t*)(m_lpData + iOffset + iCell * 2 * SHORT_SIZE + SHORT_SIZE)));
˜˜˜˜˜˜^˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1070:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
x = ((int16_t)MmGetUInt16_I((uint16_t*)(m_lpData + iOffset + iCell * 2 * SHORT_SIZE)));
˜˜˜˜˜˜^˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1071:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
y = ((int16_t)MmGetUInt16_I((uint16_t*)(m_lpData + iOffset + iCell * 2 * SHORT_SIZE + SHORT_SIZE)));
˜˜˜˜˜˜^˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1163:23: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
m_HeaderData.SetCols(ulValue);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1165:23: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
m_HeaderData.SetRows(ulValue);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1171:21: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
grid.upperleft.x = ulValue;
˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1173:21: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
grid.upperleft.y = ulValue;
˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1175:22: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
grid.upperright.x = ulValue;
˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1177:22: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
grid.upperright.y = ulValue;
˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1179:21: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
grid.lowerleft.x = ulValue;
˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1181:21: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
grid.lowerleft.y = ulValue;
˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1183:22: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
grid.lowerright.x = ulValue;
˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1185:22: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
grid.lowerright.y = ulValue;
˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1243:16: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
int iOffset = ulValue;
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1338:18: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
int alloc_size=GetFileSize();
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1367:63: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
iOffset = m_HeaderData.GetCells() * STRUCT_SIZE_FEATURE_DATA + UINT32_SIZE;
˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1367:36: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
iOffset = m_HeaderData.GetCells() * STRUCT_SIZE_FEATURE_DATA + UINT32_SIZE;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1378:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
x = MmGetUInt32_N((uint32_t*) (m_lpData + iOffset + iCell * 2 * UINT32_SIZE));
˜˜˜˜˜˜^˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1379:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
y = MmGetUInt32_N((uint32_t*) (m_lpData + iOffset + iCell * 2 * UINT32_SIZE + UINT32_SIZE));
˜˜˜˜˜˜^˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1380:44: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
m_MaskedCells.insert(std::make_pair(y * m_HeaderData.GetCols() + x, true));
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1396:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
x = MmGetUInt32_N((uint32_t*) (m_lpData + iOffset + iCell * 2 * UINT32_SIZE));
˜˜˜˜˜˜^˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1397:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
y = MmGetUInt32_N((uint32_t*) (m_lpData + iOffset + iCell * 2 * UINT32_SIZE + UINT32_SIZE));
˜˜˜˜˜˜^˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1398:41: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
m_Outliers.insert(std::make_pair(y * m_HeaderData.GetCols() + x, true));
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1611:62: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
((SHORT_SIZE + SHORT_SIZE) * GetNumMasked()) + // masked
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1610:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
((SHORT_SIZE)*(GetRows()*GetCols())) + // row*col
˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1636:40: warning: implicit conversion changes signedness: 'unsigned long' to 'int' [-Wsign-conversion]
int iOffset = m_HeaderData.GetCells() * USHORT_SIZE;
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1636:16: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int iOffset = m_HeaderData.GetCells() * USHORT_SIZE;
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1642:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
x = ((int16_t)MmGetUInt16_I((uint16_t*)(m_lpData + iOffset + iCell * 2 * USHORT_SIZE)));
˜˜˜˜˜˜^˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1644:71: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
y = ((int16_t)MmGetUInt16_I((uint16_t*)(m_lpData + iOffset + iCell * 2 * USHORT_SIZE + USHORT_SIZE)));
˜˜˜˜˜˜^˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1676:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
size_t bytecnt = GetCols() * GetRows() * sizeof(CELFileTranscriptomeEntryType);
˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1691:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
size_t bytecnt = GetCols() * GetRows() * sizeof(CELFileEntryType);
˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1706:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
size_t bytecnt = GetCols() * GetRows() * sizeof(unsigned short);
˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/file/CELFileData.cpp:1907:22: warning: implicit conversion loses integer precision: 'int' to 'short' [-Wconversion]
SetPixels(t_x,t_y,t_pixels);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1946:23: warning: implicit conversion loses integer precision: 'int' to 'short' [-Wconversion]
SetPixels(t_x,t_y,t_pixels);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:1965:26: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
m_HeaderData.SetMasked(nMasked);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:2003:28: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
m_HeaderData.SetOutliers(nOutliers);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:2437:15: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int idx_end=idx_start+intensities.size();
^˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:2445:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
intensities[idx]=MmGetFloat_I(&m_pEntries[idx].Intensity);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/file/CELFileData.cpp:2451:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
intensities[idx]=MmGetFloat_I(&m_pEntries[idx].Intensity);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/file/CELFileData.cpp:2457:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
intensities[idx]=MmGetUInt16_N(&m_pTransciptomeEntries[idx].Intensity);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/file/CELFileData.cpp:2463:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
intensities[idx]=MmGetUInt16_I(&m_pMeanIntensities[idx]);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/file/CELFileData.cpp:2437:24: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
int idx_end=idx_start+intensities.size();
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:3064:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int startIndex = (int) strHeader.rfind(" ", endIndex);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:3067:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
std::string start = strHeader.substr(0, startIndex + 1);
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜^˜˜
fusion_sdk/file/CELFileData.cpp:3068:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
std::string end = strHeader.substr(endIndex, length - endIndex);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
fusion_sdk/file/CELFileData.cpp:3068:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
std::string end = strHeader.substr(endIndex, length - endIndex);
˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜
68 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/file/CHPFileData.cpp -o fusion_sdk/file/CHPFileData.o
In file included from fusion_sdk/file/CHPFileData.cpp:20:
fusion_sdk/file/CHPFileData.h:266:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetCols(int n) { m_Cols=n; }
˜^
fusion_sdk/file/CHPFileData.h:271:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetRows(int n) { m_Rows=n; }
˜^
fusion_sdk/file/CHPFileData.h:596:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
char GetCalledBase(int index) { return calledBases[index]; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:606:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeCalledBases(int size) { calledBases.resize(size); }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:612:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetCalledBase(int index, char call) { calledBases[index] = call; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:623:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
float GetScore(int index) { return scores[index]; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:633:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeScores(int size) { scores.resize(size); }
˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:639:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetScore(int index, float score) { scores[index] = score; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:650:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ForceCallType GetForceCall(int index) { return forceCalls[index]; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:660:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeForceCalls(int size) { forceCalls.resize(size); }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:666:64: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetForceCall(int index, ForceCallType call) { forceCalls[index] = call; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:677:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
BaseCallType GetOrigCall(int index) { return origCalls[index]; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:687:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeOrigCalls(int size) { origCalls.resize(size); }
˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:693:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetOrigCall(int index, BaseCallType call) { origCalls[index] = call; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
In file included from fusion_sdk/file/CHPFileData.cpp:22:
fusion_sdk/file/FileIO.h:67:31: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
return ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8));
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/file/CHPFileData.cpp:24:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/file/CHPFileData.cpp:257:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
delete m_ProbeSetResults[i];
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
fusion_sdk/file/CHPFileData.cpp:258:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults[i]=NULL;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
fusion_sdk/file/CHPFileData.cpp:269:59: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return (CExpressionProbeSetResults *) m_ProbeSetResults[index];
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.cpp:280:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return (CGenotypeProbeSetResults *) m_ProbeSetResults[index];
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.cpp:298:58: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return (CUniversalProbeSetResults *) m_ProbeSetResults[index];
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.cpp:638:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults.resize(m_Header.m_NumProbeSets);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CHPFileData.cpp:654:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults[iset] = pResults;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:702:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults.resize(m_Header.m_NumProbeSets);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CHPFileData.cpp:709:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults[iset] = pResults;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:738:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults.resize(m_Header.m_NumProbeSets);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CHPFileData.cpp:745:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults[iset] = pResults;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:821:36: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
ReadFixedCString(instr, vString, (int) strlen(AppName));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CHPFileData.cpp:861:21: warning: implicit conversion loses integer precision: 'int32_t' (aka 'int') to 'unsigned short' [-Wconversion]
m_Header.m_Rows = ival;
˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:865:21: warning: implicit conversion loses integer precision: 'int32_t' (aka 'int') to 'unsigned short' [-Wconversion]
m_Header.m_Cols = ival;
˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:976:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults.resize(m_Header.m_NumProbeSets);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CHPFileData.cpp:980:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults[iset] = pResults;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:983:26: warning: implicit conversion loses integer precision: 'int32_t' (aka 'int') to 'unsigned short' [-Wconversion]
pResults->NumPairs = ival;
˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:986:30: warning: implicit conversion loses integer precision: 'int32_t' (aka 'int') to 'unsigned short' [-Wconversion]
pResults->NumUsedPairs = ival;
˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:1011:27: warning: implicit conversion loses integer precision: 'int32_t' (aka 'int') to 'unsigned char' [-Wconversion]
pResults->Detection = ival;
˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:1057:33: warning: implicit conversion loses integer precision: 'int32_t' (aka 'int') to 'unsigned short' [-Wconversion]
pResults->NumCommonPairs = ival;
˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:1067:25: warning: implicit conversion loses integer precision: 'int32_t' (aka 'int') to 'unsigned char' [-Wconversion]
pResults->Change = ival;
˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:1109:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults.resize(m_Header.m_NumProbeSets);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CHPFileData.cpp:1113:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults[iset] = pResults;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:1231:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults.resize(m_Header.m_NumProbeSets);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/CHPFileData.cpp:1243:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_ProbeSetResults[iset] = pResults;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.cpp:1340:33: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
ReadFixedString(instr, str, i32);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/file/CHPFileData.cpp:1343:34: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
ReadFixedString(instr, str, i32);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/file/CHPFileData.cpp:1390:35: warning: implicit conversion changes signedness: 'int' to 'uint32_t' (aka 'unsigned int') [-Wsign-conversion]
ReadFixedCString(instr, vString, (int) strlen(AppName));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
44 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o
In file included from fusion_sdk/file/FileIO.cpp:26:
fusion_sdk/file/FileIO.h:67:31: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
return ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8));
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/FileIO.cpp:269:16: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
memset(line,0,len);
˜˜˜˜˜˜ ^˜˜
fusion_sdk/file/FileIO.cpp:301:10: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
return MmGetUInt32_I((uint32_t*)ptr);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/FileIO.cpp:306:10: warning: implicit conversion changes signedness: 'uint16_t' (aka 'unsigned short') to 'int16_t' (aka 'short') [-Wsign-conversion]
return MmGetUInt16_I((uint16_t*)ptr);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/FileIO.cpp:311:10: warning: implicit conversion changes signedness: 'uint32_t' (aka 'unsigned int') to 'int32_t' (aka 'int') [-Wsign-conversion]
return MmGetUInt32_N((uint32_t*)ptr);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/FileIO.cpp:316:10: warning: implicit conversion changes signedness: 'uint16_t' (aka 'unsigned short') to 'int16_t' (aka 'short') [-Wsign-conversion]
return MmGetUInt16_N((uint16_t*)ptr);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/FileIO.cpp:321:10: warning: implicit conversion changes signedness: 'uint8_t' (aka 'unsigned char') to 'int8_t' (aka 'signed char') [-Wsign-conversion]
return MmGetUInt8((uint8_t*)ptr);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
7 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/file/FileWriter.cpp -o fusion_sdk/file/FileWriter.o
In file included from fusion_sdk/file/FileWriter.cpp:25:
In file included from fusion_sdk/file/FileWriter.h:26:
fusion_sdk/file/FileIO.h:67:31: warning: implicit conversion loses integer precision: 'int' to 'uint16_t' (aka 'unsigned short') [-Wconversion]
return ((((x) >> 8) & 0xff) | (((x) & 0xff) << 8));
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/FileWriter.cpp:175:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
WriteFixedString(outstr, str, len);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
2 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/file/TsvFile/ClfFile.cpp -o fusion_sdk/file/TsvFile/ClfFile.o
In file included from fusion_sdk/file/TsvFile/ClfFile.cpp:27:
In file included from fusion_sdk/file/TsvFile/ClfFile.h:31:
fusion_sdk/file/TsvFile/TsvFile.h:71:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_BINDTO_CNAME = 2, ///< Bound to a column index by name
^
fusion_sdk/file/TsvFile/TsvFile.h:78:22: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
VALSTATE_STRING=3,
^
fusion_sdk/file/TsvFile/TsvFile.h:87:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_TYPE_DOUBLE = 5,
^
fusion_sdk/file/TsvFile/TsvFile.h:112:35: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_LASTVALUE = -99, ///< end of errors
^
fusion_sdk/file/TsvFile/TsvFile.h:121:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_OP_GT = 0x04,
^
fusion_sdk/file/TsvFile/TsvFile.h:163:34: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_OPT_CASEINSENSTIVE = 0x02,
^
fusion_sdk/file/TsvFile/TsvFile.h:182:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/file/TsvFile/ClfFile.cpp:27:
fusion_sdk/file/TsvFile/ClfFile.h:38:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/file/TsvFile/ClfFile.cpp:278:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
9 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/file/TsvFile/PgfFile.cpp -o fusion_sdk/file/TsvFile/PgfFile.o
In file included from fusion_sdk/file/TsvFile/PgfFile.cpp:274:
In file included from fusion_sdk/file/TsvFile/PgfFile.h:32:
fusion_sdk/file/TsvFile/TsvFile.h:71:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_BINDTO_CNAME = 2, ///< Bound to a column index by name
^
fusion_sdk/file/TsvFile/TsvFile.h:78:22: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
VALSTATE_STRING=3,
^
fusion_sdk/file/TsvFile/TsvFile.h:87:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_TYPE_DOUBLE = 5,
^
fusion_sdk/file/TsvFile/TsvFile.h:112:35: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_LASTVALUE = -99, ///< end of errors
^
fusion_sdk/file/TsvFile/TsvFile.h:121:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_OP_GT = 0x04,
^
fusion_sdk/file/TsvFile/TsvFile.h:163:34: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_OPT_CASEINSENSTIVE = 0x02,
^
fusion_sdk/file/TsvFile/TsvFile.h:182:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/file/TsvFile/PgfFile.cpp:274:
fusion_sdk/file/TsvFile/PgfFile.h:39:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/file/TsvFile/PgfFile.cpp:400:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
9 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/file/TsvFile/TsvFile.cpp -o fusion_sdk/file/TsvFile/TsvFile.o
In file included from fusion_sdk/file/TsvFile/TsvFile.cpp:24:
fusion_sdk/file/TsvFile/TsvFile.h:71:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_BINDTO_CNAME = 2, ///< Bound to a column index by name
^
fusion_sdk/file/TsvFile/TsvFile.h:78:22: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
VALSTATE_STRING=3,
^
fusion_sdk/file/TsvFile/TsvFile.h:87:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_TYPE_DOUBLE = 5,
^
fusion_sdk/file/TsvFile/TsvFile.h:112:35: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_LASTVALUE = -99, ///< end of errors
^
fusion_sdk/file/TsvFile/TsvFile.h:121:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_OP_GT = 0x04,
^
fusion_sdk/file/TsvFile/TsvFile.h:163:34: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_OPT_CASEINSENSTIVE = 0x02,
^
fusion_sdk/file/TsvFile/TsvFile.h:182:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from fusion_sdk/file/TsvFile/TsvFile.cpp:28:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/file/TsvFile/TsvFile.cpp:146:15: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
str_lc[i]=::tolower(str_lc[i]);
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:162:25: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
unsigned char c_begin=str[0];
˜˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:163:23: warning: implicit conversion changes signedness: 'char' to 'unsigned char' [-Wsign-conversion]
unsigned char c_end=str[str_size-1];
˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:200:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vec.resize(num+1);
˜˜˜ ˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:201:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vec[num].assign(str,pos1,str.size()-pos1);
˜˜˜ ^˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:204:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vec.resize(num+1);
˜˜˜ ˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:205:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
vec[num].assign(str,pos1,pos2-pos1);
˜˜˜ ^˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:255:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
estring.reserve(i_max);
˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:258:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
char c=str[i];
˜˜˜ ^
fusion_sdk/file/TsvFile/TsvFile.cpp:259:13: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
char cc=escapeChar(c);
˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:252:13: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int i_max=str.size();
˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:531:8: warning: implicit conversion loses integer precision: 'int' to 'short' [-Wconversion]
*val=tmp_val;
˜^˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:554:15: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
m_value_int=strtol(ptr_start,&ptr_end,10);
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:636:16: warning: implicit conversion loses integer precision: 'unsigned long' to 'unsigned int' [-Wshorten-64-to-32]
m_value_uint=strtoul(m_ptr_start,&m_ptr_end,10);
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:717:3: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
TSV_SPLIT_VEC_BODY(int);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:702:11: note: expanded from macro 'TSV_SPLIT_VEC_BODY'
val=CONVERT_FUNC(); \
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:716:24: note: expanded from macro 'CONVERT_FUNC'
#define CONVERT_FUNC() strtol(&m_buffer[pos1],&pos_out,10)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:717:3: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
TSV_SPLIT_VEC_BODY(int);
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:706:11: note: expanded from macro 'TSV_SPLIT_VEC_BODY'
val=CONVERT_FUNC(); \
˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:716:24: note: expanded from macro 'CONVERT_FUNC'
#define CONVERT_FUNC() strtol(&m_buffer[pos1],&pos_out,10)
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:1397:19: warning: implicit conversion changes signedness: 'int' to 'linenum_t' (aka 'unsigned int') [-Wsign-conversion]
return m_lineNum-1;
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:1496:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
for (unsigned int clvl=clvl_start;clvl<clvl_size;clvl++) {
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:1495:26: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
unsigned int clvl_size=m_column_map.size();
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:1497:28: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
unsigned int cidx_size=m_column_map[clvl].size();
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:1552:10: warning: implicit conversion changes signedness: 'int' to 'linenum_t' (aka 'unsigned int') [-Wsign-conversion]
return m_lineNum;
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:1569:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return (int)m_column_map[clvl].size();
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:1653:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
delete m_headers_vec[vi];
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:1654:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_headers_vec[vi]=NULL;
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:1691:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_headers_curptr=m_headers_vec[m_headers_idx++];
˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:1980:33: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (f_tsv.getHeader(key_vec[i],val)==TSV_OK) {
˜˜˜˜˜˜˜ ^
fusion_sdk/file/TsvFile/TsvFile.cpp:1981:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
addHeader(prefix+key_vec[i],val);
˜˜˜˜˜˜˜ ^
fusion_sdk/file/TsvFile/TsvFile.cpp:1993:10: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
return m_headers_vec.size();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2024:17: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
int tmp_val=strtol(str_in,&str_out,0);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2178:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ((m_headers_vec[vi]!=NULL) && (m_headers_vec[vi]->m_key==key)) {
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2178:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if ((m_headers_vec[vi]!=NULL) && (m_headers_vec[vi]->m_key==key)) {
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2179:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
deleteHeaderPtr(m_headers_vec[vi]);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2230:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (m_headers_vec[vi]==hdrptr) {
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2231:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_headers_vec[vi]=NULL;
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2264:38: warning: implicit conversion changes signedness: 'unsigned char' to 'char' [-Wsign-conversion]
int cnt_fieldsep=countchars(line,m_optFieldSep);
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2279:17: warning: implicit conversion changes signedness: 'unsigned char' to 'char' [-Wsign-conversion]
splitstr(line,m_optFieldSep,colname_vec);
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2286:20: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
defineColumn(0,col,colname_vec[col]);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2385:35: warning: implicit conversion changes signedness: 'unsigned char' to 'char' [-Wsign-conversion]
splitstr(i->second->m_value,m_optFieldSep,colname_vec);
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2395:24: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
defineColumn(clvl,col-clvl,colname_vec[col]);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2395:32: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
defineColumn(clvl,col-clvl,colname_vec[col]);
˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜^˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2432:29: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map.resize(clvl+1);
˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2433:34: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_cnametocidx_map.resize(clvl+1);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2436:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (cidx>=(int)m_column_map[clvl].size()) {
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2437:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl].resize(cidx+1);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2437:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl].resize(cidx+1);
˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2440:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl][cidx].m_clvl=clvl;
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2440:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl][cidx].m_clvl=clvl;
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2441:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl][cidx].m_cidx=cidx;
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2441:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl][cidx].m_cidx=cidx;
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2442:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl][cidx].m_cname=cname;
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2442:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl][cidx].m_cname=cname;
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2443:16: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl][cidx].m_ctype=ctype;
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2443:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl][cidx].m_ctype=ctype;
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2445:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_cnametocidx_map[clvl][cname]=cidx;
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2449:18: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl][cidx].setPrecision(m_optPrecision);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2449:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[clvl][cidx].setPrecision(m_optPrecision);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2466:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
i=m_cnametocidx_map[clvl].find(cname);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2468:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (i!=m_cnametocidx_map[clvl].end()) {
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2481:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (i=m_cnametocidx_map[clvl].begin();i!=m_cnametocidx_map[clvl].end();i++) {
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2481:63: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (i=m_cnametocidx_map[clvl].begin();i!=m_cnametocidx_map[clvl].end();i++) {
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2576:32: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
(cidx>=(int)m_column_map[clvl].size())) {
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2579:24: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return &m_column_map[clvl][cidx];
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2579:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return &m_column_map[clvl][cidx];
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2805:16: warning: implicit conversion loses integer precision: 'int' to 'char_type' (aka 'char') [-Wconversion]
M_UNGETC(c);
˜˜˜˜˜˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:58:41: note: expanded from macro 'M_UNGETC'
#define M_UNGETC(c) (m_rdbuf->sputbackc(c))
^
fusion_sdk/file/TsvFile/TsvFile.cpp:2810:16: warning: implicit conversion loses integer precision: 'int' to 'char_type' (aka 'char') [-Wconversion]
M_UNGETC(c);
˜˜˜˜˜˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:58:41: note: expanded from macro 'M_UNGETC'
#define M_UNGETC(c) (m_rdbuf->sputbackc(c))
^
fusion_sdk/file/TsvFile/TsvFile.cpp:2815:16: warning: implicit conversion loses integer precision: 'int' to 'char_type' (aka 'char') [-Wconversion]
M_UNGETC(c);
˜˜˜˜˜˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:58:41: note: expanded from macro 'M_UNGETC'
#define M_UNGETC(c) (m_rdbuf->sputbackc(c))
^
fusion_sdk/file/TsvFile/TsvFile.cpp:2847:16: warning: implicit conversion loses integer precision: 'int' to 'char_type' (aka 'char') [-Wconversion]
M_UNGETC(c);
˜˜˜˜˜˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:58:41: note: expanded from macro 'M_UNGETC'
#define M_UNGETC(c) (m_rdbuf->sputbackc(c))
^
fusion_sdk/file/TsvFile/TsvFile.cpp:2852:16: warning: implicit conversion loses integer precision: 'int' to 'char_type' (aka 'char') [-Wconversion]
M_UNGETC(c);
˜˜˜˜˜˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:58:41: note: expanded from macro 'M_UNGETC'
#define M_UNGETC(c) (m_rdbuf->sputbackc(c))
^
fusion_sdk/file/TsvFile/TsvFile.cpp:2967:21: warning: implicit conversion loses integer precision: 'int' to 'char' [-Wconversion]
in_quotes=c;
˜^
fusion_sdk/file/TsvFile/TsvFile.cpp:2974:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
col->m_buffer.resize(bi); // trunc the buffer to size.
˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2980:16: warning: implicit conversion loses integer precision: 'int' to 'char_type' (aka 'char') [-Wconversion]
M_UNGETC(c);
˜˜˜˜˜˜˜˜˜^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:58:41: note: expanded from macro 'M_UNGETC'
#define M_UNGETC(c) (m_rdbuf->sputbackc(c))
^
fusion_sdk/file/TsvFile/TsvFile.cpp:2981:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
col->m_buffer.resize(bi); // trunc
˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:2989:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
col->m_buffer.resize(bi);
˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3019:41: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
unsigned int cidx_size=m_column_map[line_clvl].size();
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3021:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
f_read_column(&m_column_map[line_clvl][cidx]);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3022:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_column_map[line_clvl][cidx].linkedvars_assign(this);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3038:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
f_read_column(&m_column_map[line_clvl][cidx]);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3038:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
f_read_column(&m_column_map[line_clvl][cidx]);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3019:28: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
unsigned int cidx_size=m_column_map[line_clvl].size();
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3075:34: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
unsigned int m_column_map_size=m_column_map.size();
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3077:41: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
unsigned int m_column_map_clvl_size=m_column_map[clvl].size();
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3163:36: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
unsigned int m_linkvars_vec_size=m_linkvars_vec.size();
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3270:40: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_BIND_FUNC(std::string,m_ptr_string);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3271:29: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_BIND_FUNC(int,m_ptr_int);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3272:35: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_BIND_FUNC(double,m_ptr_double);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3273:33: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_BIND_FUNC(float,m_ptr_float);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3274:39: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_BIND_FUNC(unsigned int,m_ptr_uint);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3275:40: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_BIND_FUNC(uint64_t,m_ptr_ulonglong);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3351:9: warning: implicit conversion loses integer precision: 'int_type' (aka 'int') to 'char' [-Wconversion]
c = M_PEEK();
˜ ^˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:57:22: note: expanded from macro 'M_PEEK'
#define M_PEEK() (m_rdbuf->sgetc())
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3410:20: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
clvl_seen.resize(getLevelCount(),0);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3417:19: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (clvl_seen[clvl]==1) {
˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3421:15: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
clvl_seen[clvl]=1;
˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3481:10: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
clvl=lineLevel();
˜^˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3483:33: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int cidx_max=getColumnCount(clvl);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3485:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
col=&m_column_map[clvl][cidx];
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3486:24: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int col_cur_size=col->m_buffer.size();
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:3738:30: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_GET_VEC_FUNC(std::string);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3739:22: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_GET_VEC_FUNC(int);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3740:24: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_GET_VEC_FUNC(float);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3741:25: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_GET_VEC_FUNC(double);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3802:22: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_SET_VEC_FUNC(int);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3803:24: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_SET_VEC_FUNC(float);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3804:25: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_SET_VEC_FUNC(double);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:3888:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
h_ptr=m_headers_vec[hi];
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4035:13: warning: implicit conversion changes signedness: 'linenum_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
m_lineNum=line;
˜^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4117:42: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
for (size_t c_idx=0;c_idx<m_column_map[m_lineLvl].size();c_idx++) {
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4121:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
line.append(m_column_map[m_lineLvl][c_idx].m_buffer);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4182:22: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
m_index_lineclvl[m_lineLvl].push_back(l_num);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4182:43: warning: implicit conversion changes signedness: 'int' to 'const value_type' (aka 'const unsigned int') [-Wsign-conversion]
m_index_lineclvl[m_lineLvl].push_back(l_num);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4195:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
idx->data_add(&m_column_map[m_lineLvl][idx->m_bindto_cidx],l_num);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4195:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
idx->data_add(&m_column_map[m_lineLvl][idx->m_bindto_cidx],l_num);
˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4195:68: warning: implicit conversion changes signedness: 'int' to 'linenum_t' (aka 'unsigned int') [-Wsign-conversion]
idx->data_add(&m_column_map[m_lineLvl][idx->m_bindto_cidx],l_num);
˜˜˜ ^˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4167:33: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
unsigned int m_index_vec_size=m_index_vec.size();
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4173:32: warning: implicit conversion loses integer precision: 'streamoff' (aka 'long long') to 'const value_type' (aka 'const unsigned int') [-Wshorten-64-to-32]
m_index_linefpos.push_back(m_line_fpos);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4366:46: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_DEFUN_FIND_BEGIN(int ,std::string);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:4367:46: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_DEFUN_FIND_BEGIN(std::string,std::string);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:4368:38: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_DEFUN_FIND_BEGIN(int ,int);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:4369:38: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_DEFUN_FIND_BEGIN(std::string,int);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:4370:41: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_DEFUN_FIND_BEGIN(int ,double);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:4371:41: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_DEFUN_FIND_BEGIN(std::string,double);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:4372:47: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_DEFUN_FIND_BEGIN(int ,unsigned int);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:4373:47: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_DEFUN_FIND_BEGIN(std::string,unsigned int);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:4374:43: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_DEFUN_FIND_BEGIN(int ,uint64_t);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:4375:43: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
TSV_DEFUN_FIND_BEGIN(std::string,uint64_t);
^
fusion_sdk/file/TsvFile/TsvFile.cpp:4386:10: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return (int)m_findresults.size();
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4436:22: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
defineColumn(li,ci,split_coldef[0]);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4436:25: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
defineColumn(li,ci,split_coldef[0]);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4482:25: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
h_ptr=m_headers_vec[h_i];
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4505:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
size_t cidx_size=m_column_map[clvl].size();
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4508:30: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
write_str(m_column_map[clvl][cidx].m_cname);
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4523:19: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
writeFieldSep(clvl);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4524:29: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
writeColumnHeaders_clvl(clvl);
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4678:20: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
size_t cidx_size=(int)m_column_map[clvl].size();
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4678:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
size_t cidx_size=(int)m_column_map[clvl].size();
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4683:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
TsvFileField* col=&m_column_map[clvl][cidx];
˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4758:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
set(clvl,cidx,f_tsv.m_column_map[clvl][cidx].m_buffer);
˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4758:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
set(clvl,cidx,f_tsv.m_column_map[clvl][cidx].m_buffer);
˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/TsvFile/TsvFile.cpp:4915:17: warning: implicit conversion of NULL constant to 'char' [-Wnull-conversion]
char last = NULL;
˜˜˜˜ ^˜˜˜
'\0'
fusion_sdk/file/TsvFile/TsvFile.cpp:4913:13: warning: implicit conversion loses integer precision: 'typename iterator_traits<istreambuf_iterator<char, char_traits<char> > >::difference_type' (aka 'long long') to 'int' [-Wshorten-64-to-32]
count = std::count(std::istreambuf_iterator<char>(fstream), std::istreambuf_iterator<char>(), '\n');
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
147 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/util/AffxByteArray.cpp -o fusion_sdk/util/AffxByteArray.o
In file included from fusion_sdk/util/AffxByteArray.cpp:27:
In file included from fusion_sdk/util/AffxByteArray.h:29:
fusion_sdk/util/AffxString.h:92:71: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
AffxString mid(int iStartIndex, int iLength) const {return substr(iStartIndex, iStartIndex + iLength);}
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/AffxString.h:92:96: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
AffxString mid(int iStartIndex, int iLength) const {return substr(iStartIndex, iStartIndex + iLength);}
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜
fusion_sdk/util/AffxString.h:125:21: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
toLower(iIndex);
˜˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:133:21: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
toUpper(iIndex);
˜˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:176:42: warning: implicit conversion changes signedness: 'char' to 'unsigned int' [-Wsign-conversion]
nHash = (nHash<<5) + nHash + getAt(iIndex);
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/AffxString.h:211:67: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
inline AffxString::AffxString(char ch, int nRepeat) : std::string(nRepeat, ch) {}
˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/AffxString.h:213:80: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
inline AffxString::AffxString(const char* pch, int nLength) : std::string(pch, nLength) {}
˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/AffxString.h:217:17: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return getAt(nIndex) == _TAB_CHAR;
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:222:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return isalpha(getAt(nIndex)) != 0;
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:227:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return isalnum(getAt(nIndex)) != 0;
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:232:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return isspace(getAt(nIndex)) != 0;
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:237:17: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return getAt(nIndex) == ' ';
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:242:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return ispunct(getAt(nIndex)) != 0;
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:247:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return isupper(getAt(nIndex)) != 0;
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:252:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return islower(getAt(nIndex)) != 0;
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:257:25: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return isdigit(getAt(nIndex)) != 0;
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:262:26: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
return isxdigit(getAt(nIndex)) != 0;
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:271:10: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
setAt(nIndex, (char)toupper(getAt(nIndex)));
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:271:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
setAt(nIndex, (char)toupper(getAt(nIndex)));
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:276:10: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
setAt(nIndex, (char)tolower(getAt(nIndex)));
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:276:38: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
setAt(nIndex, (char)tolower(getAt(nIndex)));
˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxString.h:311:28: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if (!isdigit(getAt(i)) &&
˜˜˜˜˜ ^
fusion_sdk/util/AffxString.h:312:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
!(getAt(i) == '.' && 0 < i && i < (int)length() - 1) &&
˜˜˜˜˜ ^
fusion_sdk/util/AffxString.h:313:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
!(getAt(i) == '-' && i == 0) &&
˜˜˜˜˜ ^
fusion_sdk/util/AffxString.h:314:21: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
!(getAt(i) == '+' && i == 0))
˜˜˜˜˜ ^
In file included from fusion_sdk/util/AffxByteArray.cpp:28:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/util/AffxByteArray.cpp:105:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(m_pData, ba.m_pData, (iLength * sizeof(char)));
^˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:116:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
m_pData = (char*) new char[iLength * sizeof(char)];
^˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:153:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
m_pData = (char*) new char[nNewSize * sizeof(char)];
^˜˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:155:22: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(m_pData, 0, nNewSize * sizeof(char)); // zero fill
^˜˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:166:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&m_pData[m_nSize], 0, (nNewSize-m_nSize) * sizeof(char));
˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:188:37: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
char* pNewData = (char*) new char[nNewMax * sizeof(char)];
^˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:191:29: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(pNewData, m_pData, m_nSize * sizeof(char));
^˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:195:42: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&pNewData[m_nSize], 0, (nNewSize-m_nSize) * sizeof(char));
˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:224:46: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memcpy(m_pData + nOldSize, src.m_pData, src.m_nSize * sizeof(char));
˜˜˜˜^˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:233:36: warning: implicit conversion changes signedness: 'const int' to 'unsigned long' [-Wsign-conversion]
memmove(m_pData, src.m_pData, src.m_nSize * sizeof(char));
˜˜˜˜^˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:248:32: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
pNewData = (char*) new char[m_nSize * sizeof(char)];
^˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:250:30: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memcpy(pNewData, m_pData, m_nSize * sizeof(char));
^˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:283:13: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
(nOldSize-nIndex) * sizeof(char));
˜˜˜˜˜˜˜˜^˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:287:31: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memset(&m_pData[nIndex], 0, nCount * sizeof(char));
^˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:303:4: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
nMoveCount * sizeof(char));
^˜˜˜˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:367:31: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if (getAt(i) == str.getAt(i))
˜˜˜ ^
fusion_sdk/util/AffxByteArray.cpp:394:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if ((getAt(i) == str.getAt(i)) || (getAt(i) + ' ' == str.getAt(i)))
˜˜˜ ^
fusion_sdk/util/AffxByteArray.cpp:394:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if ((getAt(i) == str.getAt(i)) || (getAt(i) + ' ' == str.getAt(i)))
˜˜˜ ^
fusion_sdk/util/AffxByteArray.cpp:404:32: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if ((getAt(i) == str.getAt(i)) || (getAt(i) - ' ' == str.getAt(i)))
˜˜˜ ^
fusion_sdk/util/AffxByteArray.cpp:404:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if ((getAt(i) == str.getAt(i)) || (getAt(i) - ' ' == str.getAt(i)))
˜˜˜ ^
fusion_sdk/util/AffxByteArray.cpp:412:35: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
else if (getAt(i) == str.getAt(i))
˜˜˜ ^
fusion_sdk/util/AffxByteArray.cpp:439:9: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
return atol(buffer);
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:447:62: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
memmove((m_pData + iDestStart), (src.m_pData + iSrcStart), (iLength * sizeof(char)));
^˜˜˜˜˜˜ ˜
fusion_sdk/util/AffxByteArray.cpp:654:40: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
char *psz = (char *)malloc(getSize() + 1);
˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜^˜˜
fusion_sdk/util/AffxByteArray.cpp:658:35: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(psz, (char *)getData(), getSize());
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:671:23: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int iCompareLength = strCompare.getLength();
˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:678:42: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if (getAt(iIndex) != strCompare.getAt(iIndex))
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:803:63: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
ba.setAt(iIndex, strComplement.getAt(ba.getAt(iIndex) - 'a'));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:810:58: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
ba.setAt(i, strComplement.getAt(ba.getAt(iIndex) - 'a'));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:811:49: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
ba.setAt(iIndex, strComplement.getAt(by - 'a'));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜^˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:837:65: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
memcpy(((char*)m_pData + oldcount), ((char *)bytes + offset), len);
˜˜˜˜˜˜ ^˜˜
fusion_sdk/util/AffxByteArray.cpp:915:58: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
memcpy((void*)(ba.m_pData), (void*)(m_pData + iStart), iLength);
˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:1218:58: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
memcpy((void*)(ba.m_pData), (void*)(m_pData + iStart), iLength);
˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:1259:58: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
memcpy((void*)(ba.m_pData), (void*)(m_pData + iStart), iLength);
˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:1320:47: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
if (this->m_pData[iIndex] != that.charAt(iIndex))
˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:1323:57: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
iResult = (this->m_pData[iIndex] - that.charAt(iIndex));
˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:1419:11: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
setSize(uiNumberBytes);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/AffxByteArray.cpp:1416:32: warning: implicit conversion loses integer precision: 'int64_t' (aka 'long long') to 'unsigned int' [-Wshorten-64-to-32]
unsigned int uiNumberBytes = Fs::fileSize(strFileName);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
64 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/util/AffxConv.cpp -o fusion_sdk/util/AffxConv.o
fusion_sdk/util/AffxConv.cpp:63:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (str[i] != ',') {strInt += str[i];}
˜˜˜ ^
fusion_sdk/util/AffxConv.cpp:63:37: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (str[i] != ',') {strInt += str[i];}
˜˜˜ ^
fusion_sdk/util/AffxConv.cpp:66:9: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
return atol(strInt.c_str());
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/AffxConv.cpp:92:11: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (str[i] != ',') {strDouble += str[i];}
˜˜˜ ^
fusion_sdk/util/AffxConv.cpp:92:40: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if (str[i] != ',') {strDouble += str[i];}
˜˜˜ ^
fusion_sdk/util/AffxConv.cpp:119:14: warning: extra tokens at end of #ifdef directive [-Wextra-tokens]
#ifdef WIN32 && !defined(__MINGW32__)
^
//
fusion_sdk/util/AffxConv.cpp:124:8: warning: self-comparison always evaluates to false [-Wtautological-compare]
if (i != i) {return "nan";}
^
fusion_sdk/util/AffxConv.cpp:340:26: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
str = strMonths.substr(iMonth, 3);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜
8 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/util/MsgStream.cpp -o fusion_sdk/util/MsgStream.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/util/Util.cpp -o fusion_sdk/util/Util.o
In file included from fusion_sdk/util/Util.cpp:35:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/util/Util.cpp:178:59: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
std::string tmpstr=str.substr(str.size()-(ending.size()+charsAtEnd),ending.size());
˜^˜˜˜˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:236:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
size_t pos = s.find(delim,curPos);
˜ ^˜˜˜˜˜
fusion_sdk/util/Util.cpp:238:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
words.push_back(s.substr(curPos, s.size()));
˜ ^˜˜˜˜˜
fusion_sdk/util/Util.cpp:241:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
string sub = s.substr(curPos, pos - curPos);
˜ ^˜˜˜˜˜
fusion_sdk/util/Util.cpp:241:45: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
string sub = s.substr(curPos, pos - curPos);
˜ ^˜˜˜˜˜
fusion_sdk/util/Util.cpp:243:22: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
curPos = pos + delim.size();
˜ ˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:335:53: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
RowFile::matrixFromFile(tmp_target_name, qMatrix, rowSkip, colSkip);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:335:62: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
RowFile::matrixFromFile(tmp_target_name, qMatrix, rowSkip, colSkip);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:339:52: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
RowFile::matrixFromFile(tmp_query_name, tMatrix, rowSkip, colSkip);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:339:61: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
RowFile::matrixFromFile(tmp_query_name, tMatrix, rowSkip, colSkip);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:348:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
TableFile::columnFromFile(tmp_target_name, qMatrixRows, colIx, rowSkip, true);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:349:68: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
TableFile::columnFromFile(tmp_query_name, tMatrixRows, colIx, rowSkip, true);
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:355:40: warning: implicit conversion changes signedness: 'unsigned int' to 'mapped_type' (aka 'int') [-Wsign-conversion]
qMatrixMap[qMatrixRows[rowIx]] = rowIx;
˜ ^˜˜˜˜
fusion_sdk/util/Util.cpp:369:23: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
int qMatRowIx = rowIx;
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/util/Util.cpp:377:28: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double val = qMatrix[qMatRowIx][colIx] - tMatrix[rowIx][colIx];
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:380:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
double epsilon2 = fraction*Max( fabs(qMatrix[qMatRowIx][colIx]), fabs(tMatrix[rowIx][colIx]) );
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/portability/affy-base-types.h:61:27: note: expanded from macro 'Max'
#define Max(a,b) std::max(a,b)
^
fusion_sdk/util/Util.cpp:384:36: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
okFinite &= isFinite(qMatrix[qMatRowIx][colIx]);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:395:38: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ToStr(qMatrix[qMatRowIx][colIx]) + " vs. " + ToStr( tMatrix[rowIx][colIx]) + ")" + " Diff: " + ToStr(val));
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:417:10: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
return diffCount;
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:363:12: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
numRow = tMatrix.size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:364:12: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
numCol = tMatrix[0].size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:427:21: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ss << words[i];
˜˜˜˜˜ ^
fusion_sdk/util/Util.cpp:788:7: warning: expression result unused [-Wunused-value]
*wStart++;
^˜˜˜˜˜˜˜˜
fusion_sdk/util/Util.cpp:829:25: warning: implicit conversion loses integer precision: 'long' to 'int' [-Wshorten-64-to-32]
nextSize = wStart - wEnd;
˜ ˜˜˜˜˜˜˜^˜˜˜˜˜
fusion_sdk/util/Util.cpp:882:23: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
changeEnd(str_vec[i],from,to);
˜˜˜˜˜˜˜ ^
26 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/util/Err.cpp -o fusion_sdk/util/Err.o
fusion_sdk/util/Err.cpp:69:25: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
unsigned int size = getParam().m_ErrHandlers.size();
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/Err.cpp:94:26: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'unsigned int' [-Wshorten-64-to-32]
unsigned int count = getParam().m_ErrHandlers.size();
˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/Err.cpp:114:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ErrHandler *handler = getParam().m_ErrHandlers[i];
˜˜˜˜˜˜˜˜ ^
fusion_sdk/util/Err.cpp:112:16: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int size = getParam().m_ErrHandlers.size();
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/Err.cpp:185:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ErrHandler *handler = getParam().m_ErrHandlers[i];
˜˜˜˜˜˜˜˜ ^
fusion_sdk/util/Err.cpp:178:13: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int size = getParam().m_ErrHandlers.size();
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/Err.cpp:202:50: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ErrHandler *handler = getParam().m_ErrHandlers[i];
˜˜˜˜˜˜˜˜ ^
fusion_sdk/util/Err.cpp:195:14: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int size = getParam().m_ErrHandlers.size();
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
8 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/util/Fs.cpp -o fusion_sdk/util/Fs.o
In file included from fusion_sdk/util/Fs.cpp:28:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/util/Fs.cpp:169:7: warning: implicit conversion changes signedness: 'uid_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
uid=getuid();
˜^˜˜˜˜˜˜˜
fusion_sdk/util/Fs.cpp:170:7: warning: implicit conversion changes signedness: 'gid_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
gid=getgid();
˜^˜˜˜˜˜˜˜
fusion_sdk/util/Fs.cpp:189:7: warning: implicit conversion changes signedness: 'uid_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
uid=getuid();
˜^˜˜˜˜˜˜˜
fusion_sdk/util/Fs.cpp:190:7: warning: implicit conversion changes signedness: 'gid_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
gid=getgid();
˜^˜˜˜˜˜˜˜
fusion_sdk/util/Fs.cpp:999:31: warning: implicit conversion loses integer precision: 'int' to 'mode_t' (aka 'unsigned short') [-Wconversion]
rv=POSIX_CHMOD(path.c_str(),mode);
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/util/Fs.cpp:1510:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if(Fs::fileExists(Fs::join(searchPathVec[i] , fileName)))
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
fusion_sdk/util/Fs.cpp:1511:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
return Fs::join(searchPathVec[i] , fileName);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^
fusion_sdk/util/Fs.cpp:1618:13: warning: implicit conversion changes signedness: 'int' to 'unsigned int' [-Wsign-conversion]
sleep(sec);
˜˜˜˜˜ ^˜˜
9 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/util/Verbose.cpp -o fusion_sdk/util/Verbose.o
In file included from fusion_sdk/util/Verbose.cpp:31:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/util/RowFile.cpp -o fusion_sdk/util/RowFile.o
In file included from fusion_sdk/util/RowFile.cpp:32:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/util/RowFile.cpp:79:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
fusion_sdk/util/RowFile.cpp:163:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
next = (int)m_CurrentLine.find(m_Delim, start);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/util/RowFile.cpp:167:42: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
words.push_back(m_CurrentLine.substr(start, next - start));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/util/RowFile.cpp:167:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
words.push_back(m_CurrentLine.substr(start, next - start));
˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜˜^˜˜˜˜˜˜
fusion_sdk/util/RowFile.cpp:160:9: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
len = m_CurrentLine.size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/RowFile.cpp:165:14: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
next = m_CurrentLine.size(); // entire string.
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/RowFile.cpp:216:43: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
memcpy(m_Buffer, m_CurrentLine.c_str(), len);
˜˜˜˜˜˜ ^˜˜
fusion_sdk/util/RowFile.cpp:221:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if(!isspace(m_CurrentLine[start]))
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/util/RowFile.cpp:226:35: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
if(!isspace(m_CurrentLine[len -1]))
˜˜˜˜˜˜˜˜˜˜˜˜˜ ˜˜˜˜^˜
fusion_sdk/util/RowFile.cpp:234:45: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
next = (int)m_CurrentLine.find(m_Delim, start);
˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/util/RowFile.cpp:206:9: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
len = m_CurrentLine.size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/RowFile.cpp:236:14: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
next = m_CurrentLine.size(); // entire string.
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/RowFile.cpp:289:31: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
string key = line->substr(startPos, delimPos-startPos);
˜˜˜˜ ^˜˜˜˜˜˜˜
fusion_sdk/util/RowFile.cpp:289:50: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
string key = line->substr(startPos, delimPos-startPos);
˜^˜˜˜˜˜˜˜
fusion_sdk/util/RowFile.cpp:375:15: warning: implicit conversion loses integer precision: 'int_type' (aka 'int') to 'char' [-Wconversion]
char c1 = input.get();
˜˜ ^˜˜˜˜˜˜˜˜˜˜
16 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/util/TableFile.cpp -o fusion_sdk/util/TableFile.o
In file included from fusion_sdk/util/TableFile.cpp:32:
In file included from fusion_sdk/util/Fs.h:28:
fusion_sdk/util/AptErrno.h:46:21: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
APT_ERR_NOTREMOVED,
^
fusion_sdk/util/TableFile.cpp:165:17: warning: explicitly assigning a variable of type 'unsigned int' to itself [-Wself-assign]
for(colIx = colIx; colIx < words.size(); colIx++) {
˜˜˜˜˜ ^ ˜˜˜˜˜
fusion_sdk/util/TableFile.cpp:169:23: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
if(words.size() - rowOffset != m_ColNames.size())
˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/util/TableFile.cpp:171:44: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
ToStr(words.size() - rowOffset) + " at line " +
˜ ^˜˜˜˜˜˜˜˜
fusion_sdk/util/TableFile.cpp:143:28: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'mapped_type' (aka 'unsigned int') [-Wshorten-64-to-32]
m_ColNameMap[name] = m_ColNames.size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
fusion_sdk/util/TableFile.cpp:185:26: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'mapped_type' (aka 'unsigned int') [-Wshorten-64-to-32]
m_RowNameMap[name] = m_Data.size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
In file included from fusion_sdk/util/TableFile.cpp:28:
fusion_sdk/util/TableFile.h:231:8: warning: private field 'm_Comment' is not used [-Wunused-private-field]
char m_Comment; ///< Comment character for data.
^
7 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c fusion_sdk/util/Convert.cpp -o fusion_sdk/util/Convert.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o
In file included from R_affx_cel_parser.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from R_affx_cel_parser.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from R_affx_cel_parser.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:38:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:71:42: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
wcstombs(cstr, cel.GetAlg().c_str(), str_length);
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:79:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
wcstombs(cstr, cel.GetParams().c_str(), str_length);
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:87:47: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
wcstombs(cstr, cel.GetChipType().c_str(), str_length);
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:95:45: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
wcstombs(cstr, cel.GetHeader().c_str(), str_length);
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:103:48: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
wcstombs(cstr, cel.GetDatHeader().c_str(), str_length);
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:111:57: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
wcstombs(cstr, cel.GetLibraryPackageName().c_str(), str_length);
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:147:23: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
INTEGER(tmp)[0] = cel.GetNumOutliers();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:153:23: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
INTEGER(tmp)[0] = cel.GetNumMasked();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:36:18: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:69:18: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = cel.GetAlg().size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:77:18: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = cel.GetParams().size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:85:18: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = cel.GetChipType().size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:93:18: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = cel.GetHeader().size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:101:18: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = cel.GetDatHeader().size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:109:18: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = cel.GetLibraryPackageName().size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cel_parser.cpp:431:38: warning: implicit conversion changes signedness: 'unsigned int' to 'R_len_t' (aka 'int') [-Wsign-conversion]
PROTECT(SET_LENGTH(outliers, outliersCount));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:137:45: note: expanded from macro 'SET_LENGTH'
#define SET_LENGTH(x, n) (x = lengthgets(x, n))
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
R_affx_cel_parser.cpp:441:36: warning: implicit conversion changes signedness: 'unsigned int' to 'R_len_t' (aka 'int') [-Wsign-conversion]
PROTECT(SET_LENGTH(masked, maskedCount));
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜˜˜˜˜
/Library/Frameworks/R.framework/Resources/include/Rdefines.h:137:45: note: expanded from macro 'SET_LENGTH'
#define SET_LENGTH(x, n) (x = lengthgets(x, n))
^
/Library/Frameworks/R.framework/Resources/include/Rinternals.h:547:31: note: expanded from macro 'PROTECT'
#define PROTECT(s) Rf_protect(s)
^
21 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o
In file included from R_affx_cdf_parser.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from R_affx_cdf_parser.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from R_affx_cdf_parser.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from R_affx_cdf_parser.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:29:
fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:47:32: warning: implicit conversion changes signedness: 'const u_int32_t' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
int GetExpos() const { return indexPos; }
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:59:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:57:20: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:169:31: warning: expression result unused [-Wunused-value]
for(int i = 0; i++; i < length(unitIndices)) {
˜ ^ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:506:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:515:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:524:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:504:18: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:513:18: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:522:18: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:619:31: warning: expression result unused [-Wunused-value]
for(int i = 0; i++; i < length(unitIndices)) {
˜ ^ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:768:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(unitName, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:988:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:766:20: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:986:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1160:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1216:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1158:20: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1214:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1479:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1637:38: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1477:20: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1635:24: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1750:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1762:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1748:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_parser.cpp:1760:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
30 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o
In file included from R_affx_cdf_extras.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from R_affx_cdf_extras.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from R_affx_cdf_extras.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27:
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:26:
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from R_affx_cdf_extras.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:29:
fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:47:32: warning: implicit conversion changes signedness: 'const u_int32_t' (aka 'const unsigned int') to 'int' [-Wsign-conversion]
int GetExpos() const { return indexPos; }
˜˜˜˜˜˜ ^˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:97:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:122:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:95:20: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:120:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:239:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(name, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:262:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:268:39: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
int res = strncmp(cstr, name, len);
˜˜˜˜˜˜˜ ^˜˜
R_affx_cdf_extras.cpp:270:35: warning: implicit conversion changes signedness: 'int' to 'unsigned long' [-Wsign-conversion]
int last = strlen(cstr)-len;
˜^˜˜
R_affx_cdf_extras.cpp:237:20: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:260:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:267:19: warning: implicit conversion loses integer precision: 'size_t' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int len = strlen(name);
˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:270:34: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32]
int last = strlen(cstr)-len;
˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
R_affx_cdf_extras.cpp:416:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:441:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:414:20: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_cdf_extras.cpp:439:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
20 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c R_affx_bpmap_parser.cpp -o R_affx_bpmap_parser.o
R_affx_bpmap_parser.cpp:95:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:104:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:114:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:124:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:159:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:166:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:93:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:102:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:112:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:122:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:157:27: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:270:34: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:268:20: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:465:50: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
INTEGER(pmx)[j] = seqHit.PMX;
˜ ˜˜˜˜˜˜˜^˜˜
R_affx_bpmap_parser.cpp:466:50: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
INTEGER(pmy)[j] = seqHit.PMY;
˜ ˜˜˜˜˜˜˜^˜˜
R_affx_bpmap_parser.cpp:469:50: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
INTEGER(mmx)[j] = seqHit.MMX;
˜ ˜˜˜˜˜˜˜^˜˜
R_affx_bpmap_parser.cpp:470:50: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
INTEGER(mmy)[j] = seqHit.MMY;
˜ ˜˜˜˜˜˜˜^˜˜
R_affx_bpmap_parser.cpp:473:46: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
INTEGER(strand)[j] = (unsigned int)seqHit.TopStrand;
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:479:41: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:485:52: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
INTEGER(startpos)[j] = seqHit.getStartPosition();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:488:49: warning: implicit conversion changes signedness: 'unsigned int' to 'int' [-Wsign-conversion]
INTEGER(centerpos)[j] = seqHit.getCenterPosition();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:549:36: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
strncpy(cstr, str.c_str(), str_length);
˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:477:27: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
R_affx_bpmap_parser.cpp:547:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = str.size();
˜ ^˜˜˜˜˜˜˜˜˜
24 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c R_affx_clf_pgf_parser.cpp -o R_affx_clf_pgf_parser.o
In file included from R_affx_clf_pgf_parser.cpp:2:
In file included from fusion_sdk/file/TsvFile/ClfFile.h:31:
fusion_sdk/file/TsvFile/TsvFile.h:71:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_BINDTO_CNAME = 2, ///< Bound to a column index by name
^
fusion_sdk/file/TsvFile/TsvFile.h:78:22: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
VALSTATE_STRING=3,
^
fusion_sdk/file/TsvFile/TsvFile.h:87:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_TYPE_DOUBLE = 5,
^
fusion_sdk/file/TsvFile/TsvFile.h:112:35: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_LASTVALUE = -99, ///< end of errors
^
fusion_sdk/file/TsvFile/TsvFile.h:121:25: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_OP_GT = 0x04,
^
fusion_sdk/file/TsvFile/TsvFile.h:163:34: warning: commas at the end of enumerator lists are a C++11 extension [-Wc++11-extensions]
TSV_OPT_CASEINSENSTIVE = 0x02,
^
fusion_sdk/file/TsvFile/TsvFile.h:182:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from R_affx_clf_pgf_parser.cpp:2:
fusion_sdk/file/TsvFile/ClfFile.h:38:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from R_affx_clf_pgf_parser.cpp:3:
fusion_sdk/file/TsvFile/PgfFile.h:39:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
9 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/file/TsvFile -Ifusion_sdk/portability -Ifusion_sdk/util -Ifusion_sdk -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -mtune=native -g -O2 -Wall -pedantic -Wconversion -O0 -c R_affx_chp_parser.cpp -o R_affx_chp_parser.o
In file included from R_affx_chp_parser.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:27:
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.h:58:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from R_affx_chp_parser.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:24:
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:28:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:146:2: warning: extra ';' outside of a function is a C++11 extension [-Wc++11-extra-semi]
};
^
In file included from R_affx_chp_parser.cpp:1:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPData.h:26:
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:32:
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:33:
fusion_sdk/calvin_files/data/src/DataSet.h:194:51: warning: implicit conversion changes signedness: 'int32_t' (aka 'int') to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
int32_t BytesPerRow() { return columnByteOffsets[header.GetColumnCnt()]; }
˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
In file included from R_affx_chp_parser.cpp:2:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:29:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:30:
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:506:38: warning: implicit conversion changes signedness: 'const int8_t' (aka 'const signed char') to 'u_int8_t' (aka 'unsigned char') [-Wsign-conversion]
u_int8_t GetReason() const { return reason; }
˜˜˜˜˜˜ ^˜˜˜˜˜
fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.h:511:40: warning: implicit conversion changes signedness: 'u_int8_t' (aka 'unsigned char') to 'int8_t' (aka 'signed char') [-Wsign-conversion]
void SetReason(u_int8_t r) { reason = r; }
˜ ^
In file included from R_affx_chp_parser.cpp:2:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.h:29:
In file included from fusion_sdk/calvin_files/fusion/src/FusionCHPDataAdapterInterface.h:35:
fusion_sdk/file/CHPFileData.h:266:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetCols(int n) { m_Cols=n; }
˜^
fusion_sdk/file/CHPFileData.h:271:31: warning: implicit conversion loses integer precision: 'int' to 'unsigned short' [-Wconversion]
void SetRows(int n) { m_Rows=n; }
˜^
fusion_sdk/file/CHPFileData.h:596:53: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
char GetCalledBase(int index) { return calledBases[index]; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:606:56: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeCalledBases(int size) { calledBases.resize(size); }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:612:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetCalledBase(int index, char call) { calledBases[index] = call; }
˜˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:623:44: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
float GetScore(int index) { return scores[index]; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:633:46: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeScores(int size) { scores.resize(size); }
˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:639:49: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetScore(int index, float score) { scores[index] = score; }
˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:650:60: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
ForceCallType GetForceCall(int index) { return forceCalls[index]; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:660:54: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeForceCalls(int size) { forceCalls.resize(size); }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:666:64: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetForceCall(int index, ForceCallType call) { forceCalls[index] = call; }
˜˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:677:57: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
BaseCallType GetOrigCall(int index) { return origCalls[index]; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
fusion_sdk/file/CHPFileData.h:687:52: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void ResizeOrigCalls(int size) { origCalls.resize(size); }
˜˜˜˜˜˜˜˜˜ ^˜˜˜
fusion_sdk/file/CHPFileData.h:693:61: warning: implicit conversion changes signedness: 'int' to 'size_type' (aka 'unsigned long') [-Wsign-conversion]
void SetOrigCall(int index, BaseCallType call) { origCalls[index] = call; }
˜˜˜˜˜˜˜˜˜ ^˜˜˜˜
R_affx_chp_parser.cpp:46:32: warning: implicit conversion changes signedness: 'int' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
wcstombs(cstr, wstr.c_str(), str_length);
˜˜˜˜˜˜˜˜ ^˜˜˜˜˜˜˜˜˜
R_affx_chp_parser.cpp:44:16: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
str_length = wstr.size();
˜ ^˜˜˜˜˜˜˜˜˜˜
R_affx_chp_parser.cpp:95:24: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int pIdx = 0, pNbr = params.size();
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_chp_parser.cpp:119:22: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
int pIdx=0, pNbr = params.size();
˜˜˜˜ ^˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_chp_parser.cpp:205:36: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
s = (char *) R_alloc((long) (ct) + 1L, sizeof(char));
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
R_affx_chp_parser.cpp:227:39: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
sc = (char *) R_alloc((long) (ct) + 1L, sizeof(char));
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
R_affx_chp_parser.cpp:228:39: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
sr = (char *) R_alloc((long) (ct) + 1L, sizeof(char));
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
R_affx_chp_parser.cpp:256:39: warning: implicit conversion changes signedness: 'long' to 'size_t' (aka 'unsigned long') [-Wsign-conversion]
sc = (char *) R_alloc((long) (ct) + 1L, sizeof(char));
˜˜˜˜˜˜˜ ˜˜˜˜˜˜˜˜˜˜˜˜^˜˜˜
R_affx_chp_parser.cpp:651:15: warning: implicit conversion loses integer precision: 'size_type' (aka 'unsigned long') to 'int' [-Wshorten-64-to-32]
numParams = seq.parameters.size();
˜ ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
R_affx_chp_parser.cpp:682:30: warning: implicit conversion changes signedness: 'u_int32_t' (aka 'unsigned int') to 'int' [-Wsign-conversion]
INTEGER(position)[i] = e.position;
˜ ˜˜^˜˜˜˜˜˜˜
29 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o affxparser.so fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPMultiDataData.o fusion_sdk/calvin_files/data/src/CHPTilingData.o fusion_sdk/calvin_files/data/src/CHPQuantificationData.o fusion_sdk/calvin_files/data/src/CHPQuantificationDetectionData.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/ColumnInfo.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionCHPLegacyData.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataAccessor.o fusion_sdk/calvin_files/fusion/src/FusionCHPMultiDataData.o fusion_sdk/calvin_files/fusion/src/FusionCHPTilingData.o fusion_sdk/calvin_files/fusion/src/FusionCHPGenericData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationData.o fusion_sdk/calvin_files/fusion/src/FusionCHPQuantificationDetectionData.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CHPMultiDataFileReader.o fusion_sdk/calvin_files/parsers/src/CHPTilingFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationFileReader.o fusion_sdk/calvin_files/parsers/src/CHPQuantificationDetectionFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o fusion_sdk/file/TsvFile/ClfFile.o fusion_sdk/file/TsvFile/PgfFile.o fusion_sdk/file/TsvFile/TsvFile.o fusion_sdk/util/AffxByteArray.o fusion_sdk/util/AffxConv.o fusion_sdk/util/MsgStream.o fusion_sdk/util/Util.o fusion_sdk/util/Err.o fusion_sdk/util/Fs.o fusion_sdk/util/Verbose.o fusion_sdk/util/RowFile.o fusion_sdk/util/TableFile.o fusion_sdk/util/Convert.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o R_affx_clf_pgf_parser.o R_affx_chp_parser.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/affxparser.buildbin-libdir/affxparser/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (affxparser)
>>>>>>>
>>>>>>> FIXING LINKS FOR affxparser.buildbin-libdir/affxparser/libs//affxparser.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "affxparser.buildbin-libdir/affxparser/libs//affxparser.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "affxparser.buildbin-libdir/affxparser/libs//affxparser.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "affxparser.buildbin-libdir/affxparser/libs//affxparser.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "affxparser.buildbin-libdir/affxparser/libs//affxparser.so"