BioC 2.12: CHECK report for ROntoTools on moscato2

Package: ROntoTools

Version: 1.0.0

Command: rm -rf ROntoTools.buildbin-libdir && mkdir ROntoTools.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ROntoTools.buildbin-libdir ROntoTools_1.0.0.tar.gz >ROntoTools-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=ROntoTools.buildbin-libdir --install="check:ROntoTools-install.out" --force-multiarch --no-vignettes --timings ROntoTools_1.0.0.tar.gz && mv ROntoTools.buildbin-libdir/* ROntoTools.Rcheck/ && rmdir ROntoTools.buildbin-libdir

StartedAt: 2013-10-09 04:00:25 -0700 (Wed, 09 Oct 2013)

EndedAt: 2013-10-09 04:12:08 -0700 (Wed, 09 Oct 2013)

EllapsedTime: 702.3 seconds

RetCode: 0

Status:  OK

CheckDir: ROntoTools.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/ROntoTools.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ROntoTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ROntoTools' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ROntoTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [197s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
plot.peRes-methods     36.38   0.04   37.17
Summary-methods        29.89   0.11   30.39
peEdgeRenderInfo       29.10   0.05   29.14
plot.pePathway-methods 29.02   0.07   29.91
peNodeRenderInfo       28.30   0.04   28.35
pe                     24.64   0.03   24.66
setEdgeWeights          7.70   0.03    7.99
** running examples for arch 'x64' ... [225s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
plot.peRes-methods     42.59   0.09   46.14
Summary-methods        36.44   0.13   36.57
peEdgeRenderInfo       31.95   0.01   32.23
plot.pePathway-methods 31.49   0.06   32.40
peNodeRenderInfo       30.56   0.13   30.81
pe                     28.09   0.05   28.18
setEdgeWeights          6.74   0.02    6.75
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'runTests.R' [47s]
 [47s] OK
** running tests for arch 'x64'
  Running 'runTests.R' [52s]
 [52s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'ROntoTools' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ROntoTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ROntoTools' as ROntoTools_1.0.0.zip
* DONE (ROntoTools)