Package: RCASPAR

Version: 1.5.0

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings RCASPAR_1.5.0.tar.gz

StartedAt: 2013-01-16 05:43:39 -0800 (Wed, 16 Jan 2013)

EndedAt: 2013-01-16 05:44:00 -0800 (Wed, 16 Jan 2013)

EllapsedTime: 21.8 seconds

RetCode: 0

Status:  OK

CheckDir: RCASPAR.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/RCASPAR.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCASPAR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCASPAR’ version ‘1.5.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RCASPAR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘RCASPAR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘RCASPAR.Rnw’ 
** testing if installed package can be loaded

* DONE (RCASPAR)

name	user	system	elapsed
Bergamaschi	0.032	0.000	0.032
RCASPAR-package	0.996	0.020	1.024
STpredictor_BLH	0.176	0.004	0.184
STpredictor_xvBLH	1.172	0.016	1.240
deriv_weight_estimator_BLH	0.008	0.004	0.012
deriv_weight_estimator_BLH_noprior	0.012	0.000	0.012
kmplt	0.008	0.000	0.009
kmplt_svrl	0.024	0.000	0.023
logrnk	0.016	0.000	0.015
pltgamma	0.008	0.000	0.006
pltprior	0.008	0.000	0.006
simpson	0.004	0.000	0.006
survData	0.004	0.000	0.007
survivAURC	0.316	0.000	0.318
survivROC	0.096	0.012	0.108
trapezoid	0.012	0.000	0.012
weight_estimator_BLH	0.008	0.000	0.008
weight_estimator_BLH_noprior	0.016	0.004	0.017
weights_BLH	0.024	0.000	0.022
weights_xvBLH	0.172	0.004	0.178