| Back to the "Multiple platform build/check report" | A B C D E F G H [I] J K L M N O P Q R S T U V W X Y Z |
| Package 315/631 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| IdMappingAnalysis 1.3.1 Alex Lisovich
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |||||
| lamb2 | Linux (openSUSE 11.4) / x86_64 | OK | [ OK ] | ||||||
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | |||||
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| Package: IdMappingAnalysis |
| Version: 1.3.1 |
| Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings IdMappingAnalysis_1.3.1.tar.gz |
| StartedAt: 2013-01-16 03:37:37 -0800 (Wed, 16 Jan 2013) |
| EndedAt: 2013-01-16 03:39:15 -0800 (Wed, 16 Jan 2013) |
| EllapsedTime: 97.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IdMappingAnalysis.Rcheck |
| Warnings: 0 |
* using log directory ‘/loc/home/biocbuild/bbs-2.12-bioc/meat/IdMappingAnalysis.Rcheck’
* using R Under development (unstable) (2012-12-17 r61365)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IdMappingAnalysis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IdMappingAnalysis’ version ‘1.3.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IdMappingAnalysis’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getBootstrap.JointUniquePairs 9.068 0.024 9.086
Bootstrap 8.744 0.016 8.755
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
IdMappingAnalysis.Rcheck/00install.out:
* installing *source* package ‘IdMappingAnalysis’ ... ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘IdMappingAnalysis.Rnw’ using ‘latin-9’ ** testing if installed package can be loaded * DONE (IdMappingAnalysis)
IdMappingAnalysis.Rcheck/IdMappingAnalysis-Ex.timings:
| name | user | system | elapsed | |
| 000-LB-.IdMapBase | 0.660 | 0.020 | 0.681 | |
| Bootstrap | 8.744 | 0.016 | 8.755 | |
| Corr | 0.636 | 0.000 | 0.633 | |
| CorrData | 0.216 | 0.008 | 0.224 | |
| CsvList.merge.Misc | 0.012 | 0.000 | 0.011 | |
| IdMap | 0.016 | 0.004 | 0.020 | |
| IdMapBase | 0.008 | 0.000 | 0.009 | |
| IdMapCounts | 0.500 | 0.000 | 0.498 | |
| IdMapDiff | 0.800 | 0.004 | 0.804 | |
| IdMapDiffCounts | 0.604 | 0.000 | 0.604 | |
| JointIdMap | 0.096 | 0.008 | 0.105 | |
| JointUniquePairs | 0.968 | 0.000 | 0.969 | |
| Mixture | 0.344 | 0.000 | 0.347 | |
| UniquePairs | 0.020 | 0.000 | 0.021 | |
| aligned.IdMapBase | 0.036 | 0.000 | 0.036 | |
| as.IdMap.UniquePairs | 0.072 | 0.000 | 0.072 | |
| as.MultiSet.CorrData | 1.189 | 0.008 | 1.199 | |
| as.UniquePairs.IdMap | 0.032 | 0.000 | 0.034 | |
| as.data.frame.IdMapBase | 0.108 | 0.004 | 0.114 | |
| as.data.frame.JointIdMap | 0.096 | 0.000 | 0.096 | |
| as.list.IdMap | 0.036 | 0.000 | 0.037 | |
| boxplot.JointUniquePairs | 0.104 | 0.004 | 0.108 | |
| byColNames.Subset | 0.028 | 0.000 | 0.028 | |
| byColumn.Subset | 0.028 | 0.000 | 0.024 | |
| byRow.Subset | 0.024 | 0.000 | 0.025 | |
| byRowNames.Subset | 0.024 | 0.000 | 0.023 | |
| clust.Mixture | 0.008 | 0.000 | 0.011 | |
| copy.Display | 0.016 | 0.000 | 0.015 | |
| corr.boxplot.JointUniquePairs | 0.124 | 0.008 | 0.134 | |
| corr.plot.JointUniquePairs | 0.088 | 0.000 | 0.089 | |
| create.Display | 0.012 | 0.000 | 0.012 | |
| create.UniquePairs | 0.156 | 0.000 | 0.159 | |
| diffCounts.plot.JointIdMap | 0.704 | 0.000 | 0.707 | |
| dim.IdMapBase | 0.036 | 0.000 | 0.033 | |
| dimnames.IdMapBase | 0.036 | 0.004 | 0.037 | |
| do.glm.JointUniquePairs | 0.032 | 0.004 | 0.038 | |
| ecdf.plot.JointIdMap | 0.312 | 0.004 | 0.317 | |
| equals.UniquePairs | 0.064 | 0.000 | 0.065 | |
| fisherTransform.DataFilter | 0.012 | 0.000 | 0.011 | |
| fisherTransformInverse.DataFilter | 0.008 | 0.004 | 0.011 | |
| fisherTransformJacobean.DataFilter | 0.012 | 0.000 | 0.011 | |
| getBootstrap.JointUniquePairs | 9.068 | 0.024 | 9.086 | |
| getCompoundEvents.IdMapDiffCounts | 0.472 | 0.000 | 0.474 | |
| getCompoundGroups.IdMapDiffCounts | 0.548 | 0.004 | 0.553 | |
| getCorr.JointUniquePairs | 0.088 | 0.008 | 0.094 | |
| getCorrData.JointUniquePairs | 0.324 | 0.004 | 0.331 | |
| getCorrDataFrame.JointUniquePairs | 0.032 | 0.004 | 0.036 | |
| getCounts.IdMap | 0.044 | 0.000 | 0.041 | |
| getCounts.JointIdMap | 0.236 | 0.000 | 0.236 | |
| getData.Corr | 0.016 | 0.000 | 0.017 | |
| getData.Mixture | 0.156 | 0.004 | 0.163 | |
| getDiff.JointIdMap | 0.304 | 0.000 | 0.305 | |
| getExperimentSet.CorrData | 0.188 | 0.000 | 0.187 | |
| getIdMapList.JointIdMap | 0.108 | 0.000 | 0.109 | |
| getMapNames.JointIdMap | 0.1 | 0.0 | 0.1 | |
| getMapNames.JointUniquePairs | 0.020 | 0.000 | 0.017 | |
| getMatch.UniquePairs | 0.076 | 0.000 | 0.075 | |
| getMatchInfo.JointIdMap | 0.104 | 0.000 | 0.106 | |
| getMatchInfo.JointUniquePairs | 0.545 | 0.000 | 0.547 | |
| getMixture.JointUniquePairs | 0.400 | 0.004 | 0.404 | |
| getSampleNames.CorrData | 0.008 | 0.004 | 0.013 | |
| getStats.IdMapCounts | 0.264 | 0.008 | 0.270 | |
| getStats.Mixture | 0.012 | 0.000 | 0.014 | |
| getUnionIdMap.JointIdMap | 0.596 | 0.000 | 0.594 | |
| getUniquePairs.Corr | 0.008 | 0.000 | 0.007 | |
| getUniquePairs.CorrData | 0.016 | 0.000 | 0.015 | |
| getUniquePairs.JointUniquePairs | 0.016 | 0.000 | 0.015 | |
| interactive.corr.boxplot.JointUniquePairs | 0.112 | 0.000 | 0.109 | |
| interactive.corr.plot.JointUniquePairs | 0.076 | 0.000 | 0.076 | |
| interactive.mixture.boxplot.JointUniquePairs | 0.300 | 0.004 | 0.304 | |
| interactive.mixture.plot.JointUniquePairs | 0.252 | 0.008 | 0.261 | |
| interactive.plot.CorrData | 0.080 | 0.004 | 0.083 | |
| interactive.plot.JointUniquePairs | 0.012 | 0.000 | 0.013 | |
| interleave.Misc | 0.008 | 0.004 | 0.011 | |
| line.loess.Display | 0.008 | 0.000 | 0.008 | |
| line.unsorted.Display | 0.016 | 0.000 | 0.015 | |
| log10.DataFilter | 0.044 | 0.000 | 0.048 | |
| merge.IdMap | 0.928 | 0.000 | 0.921 | |
| minAvgCountConstraint.DataFilter | 0.212 | 0.000 | 0.210 | |
| minCountConstraint.DataFilter | 0.324 | 0.000 | 0.325 | |
| minCountGroupConstraint.DataFilter | 0.260 | 0.004 | 0.265 | |
| mixture.boxplot.JointUniquePairs | 0.316 | 0.000 | 0.320 | |
| mixture.plot.JointUniquePairs | 0.240 | 0.000 | 0.238 | |
| plot.Bootstrap | 0.100 | 0.000 | 0.098 | |
| plot.Corr | 0.100 | 0.004 | 0.104 | |
| plot.CorrData | 0.064 | 0.000 | 0.062 | |
| plot.IdMapCounts | 0.284 | 0.000 | 0.284 | |
| plot.IdMapDiffCounts | 0.94 | 0.00 | 0.94 | |
| plot.Mixture | 0.028 | 0.004 | 0.034 | |
| primaryIDs.IdMapBase | 0.016 | 0.000 | 0.015 | |
| primaryKey.CorrData | 0.012 | 0.000 | 0.012 | |
| primaryKey.IdMapBase | 0.012 | 0.000 | 0.013 | |
| primaryKey.Mixture | 0.012 | 0.000 | 0.010 | |
| progressMsg.Display | 0.004 | 0.000 | 0.003 | |
| removeNASeries.DataFilter | 0.244 | 0.000 | 0.244 | |
| secondaryKey.CorrData | 0.012 | 0.000 | 0.010 | |
| secondaryKey.IdMapBase | 0.012 | 0.000 | 0.013 | |
| secondaryKey.Mixture | 0.008 | 0.000 | 0.010 | |
| subsetCorr.JointUniquePairs | 0.036 | 0.000 | 0.035 | |
| subsetData.JointUniquePairs | 0.036 | 0.000 | 0.035 | |
| subsetGroups.JointUniquePairs | 1.008 | 0.000 | 1.008 | |
| summary.IdMapDiffCounts | 0.468 | 0.004 | 0.472 | |
| swapKeys.IdMap | 0.100 | 0.000 | 0.101 | |
| swapKeys.UniquePairs | 0.036 | 0.004 | 0.043 | |
| textBoundingBox.Display | 0.012 | 0.000 | 0.011 | |
| to.base.Misc | 0.012 | 0.000 | 0.011 | |
| to.binary.logical.Misc | 0.192 | 0.000 | 0.192 | |
| to.index.expr.Misc | 0.008 | 0.004 | 0.010 | |
| unique.UniquePairs | 0.104 | 0.004 | 0.105 | |
| words.Misc | 0.012 | 0.000 | 0.012 | |
| zoom.pars.Display | 0.008 | 0.004 | 0.012 | |