BioC 2.12: CHECK report for DynDoc on petty

Package: DynDoc

Version: 1.38.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch DynDoc_1.38.0.tar.gz

StartedAt: 2013-10-08 22:14:00 -0700 (Tue, 08 Oct 2013)

EndedAt: 2013-10-08 22:14:33 -0700 (Tue, 08 Oct 2013)

EllapsedTime: 33.2 seconds

RetCode: 0

Status:  OK

CheckDir: DynDoc.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/DynDoc.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'DynDoc/DESCRIPTION' ... OK
* this is package 'DynDoc' version '1.38.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'DynDoc' can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'DynDoc/R/zzz.R':
  .onLoad has wrong argument list 'pkgname, libname'

Package startup functions should have two arguments with names starting
  with 'lib' and 'pkg', respectively.
See section 'Good practice' in '?.onAttach'.

getVignette: no visible global function definition for
  'buildVersionNumber'
getVignette: no visible global function definition for
  'package.description'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/DynDoc.Rcheck/00check.log'
for details.

* installing *source* package 'DynDoc' ...
** R
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'DynDoc'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (DynDoc)

name	user	system	elapsed
chunkList-class	0.099	0.007	0.123
codeChunk-class	0.054	0.000	0.055
getPkgVigList	0.059	0.001	0.060
tangleToR	0.047	0.001	0.048