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Package 118/671HostnameOS / ArchBUILDCHECKBUILD BIN
ChIPseqR 1.14.0
Peter Humburg
Snapshot Date: 2013-04-30 17:01:37 -0700 (Tue, 30 Apr 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_12/madman/Rpacks/ChIPseqR
Last Changed Rev: 75263 / Revision: 76155
Last Changed Date: 2013-04-03 14:32:27 -0700 (Wed, 03 Apr 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 
pelham Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: ChIPseqR
Version: 1.14.0
Command: rm -rf ChIPseqR.buildbin-libdir && mkdir ChIPseqR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChIPseqR_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ChIPseqR.buildbin-libdir
StartedAt: 2013-05-01 12:14:28 -0700 (Wed, 01 May 2013)
EndedAt: 2013-05-01 12:15:05 -0700 (Wed, 01 May 2013)
EllapsedTime: 36.6 seconds
RetCode: 0
Status:  OK 
PackageFile: ChIPseqR_1.14.0.tgz
PackageFileSize: 523.8 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ChIPseqR.buildbin-libdir ChIPseqR_1.14.0.tar.gz'
>>>>>>> 

* installing *source* package 'ChIPseqR' ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=native -g -O2 -Wall -pedantic -Wconversion -c startScore.c -o startScore.o
startScore.c:66:15: warning: unused variable 'tmp_stat' [-Wunused-variable]
        double stat, tmp_stat;
                     ^
startScore.c:177:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
                        fwdBgRate = maxBg;
                                  ˜ ^˜˜˜˜
startScore.c:181:16: warning: implicit conversion turns floating-point number into integer: 'double' to 'int' [-Wconversion]
                        revBgRate = maxBg;
                                  ˜ ^˜˜˜˜
3 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o ChIPseqR.so startScore.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/ChIPseqR.buildbin-libdir/ChIPseqR/libs
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import 'image' when loading 'graphics'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import 'image' when loading 'graphics'
* DONE (ChIPseqR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ChIPseqR.buildbin-libdir/ChIPseqR/libs//ChIPseqR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs//ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs//ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs//ChIPseqR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "ChIPseqR.buildbin-libdir/ChIPseqR/libs//ChIPseqR.so"