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Package 623/658HostnameOS / ArchBUILDCHECKBUILD BIN
ternarynet 1.3.2
Matthew N. McCall
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ternarynet
Last Changed Rev: 73933 / Revision: 74774
Last Changed Date: 2013-03-05 09:19:42 -0800 (Tue, 05 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ternarynet
Version: 1.3.2
Command: rm -rf ternarynet.buildbin-libdir && mkdir ternarynet.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ternarynet.buildbin-libdir ternarynet_1.3.2.tar.gz
StartedAt: 2013-03-25 06:10:46 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 06:11:10 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 24.2 seconds
RetCode: 0
Status:  OK  
PackageFile: ternarynet_1.3.2.zip
PackageFileSize: 653.4 KiB

Command output


install for i386

* installing *source* package 'ternarynet' ...
** libs
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c tnetfit.cc -o tnetfit.o
tnetfit.cc: In function 'SEXPREC* tnetfit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetfit.cc:24:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
tnetfit.cc:24:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
tnetfit.cc:24:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
tnetfit.cc:73:39: warning: unused variable 'tempi' [-Wunused-variable]
tnetfit.cc:311:53: warning: 'newScore' may be used uninitialized in this function [-Wuninitialized]
tnetfit.cc:207:42: warning: 'muci_old' may be used uninitialized in this function [-Wuninitialized]
tnetfit.cc:202:44: warning: 'sigmaci' may be used uninitialized in this function [-Wuninitialized]
tnetfit.cc:207:42: warning: 'sigma0' may be used uninitialized in this function [-Wuninitialized]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c tnetfuncs.cc -o tnetfuncs.o
tnetfuncs.cc: In function 'double AttractorDistanceForced(int, int, int, int, double, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:469:5: warning: unused variable 'tableWidth' [-Wunused-variable]
tnetfuncs.cc:477:5: warning: unused variable 'ipause' [-Wunused-variable]
tnetfuncs.cc: In function 'double initialTemp(double, int, int, int, int, int, double, double, double, int, const double*, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:567:6: warning: unused variable 'ipause' [-Wunused-variable]
tnetfuncs.cc:571:16: warning: unused variable 'i' [-Wunused-variable]
g++ -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c tnetpost.cc -o tnetpost.o
tnetpost.cc: In function 'SEXPREC* tnetpost(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetpost.cc:25:9: warning: unused variable 'ipause' [-Wunused-variable]
tnetpost.cc:27:9: warning: unused variable 'm0fit' [-Wunused-variable]
tnetpost.cc:28:32: warning: variable 'minScore' set but not used [-Wunused-but-set-variable]
tnetpost.cc:28:42: warning: unused variable 'finalScore' [-Wunused-variable]
tnetpost.cc:30:9: warning: unused variable 'l0' [-Wunused-variable]
tnetpost.cc:30:13: warning: unused variable 'stage_count' [-Wunused-variable]
tnetpost.cc:30:26: warning: unused variable 'tempi' [-Wunused-variable]
tnetpost.cc:30:33: warning: unused variable 'jtrans' [-Wunused-variable]
tnetpost.cc:30:41: warning: unused variable 'nTransition' [-Wunused-variable]
tnetpost.cc:36:21: warning: variable 'xSeedFit' set but not used [-Wunused-but-set-variable]
tnetpost.cc:38:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
tnetpost.cc:38:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
tnetpost.cc:38:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
tnetpost.cc:39:9: warning: variable 'maxStage' set but not used [-Wunused-but-set-variable]
tnetpost.cc:39:19: warning: variable 'maxTransition' set but not used [-Wunused-but-set-variable]
tnetpost.cc:40:12: warning: variable 'epsilon' set but not used [-Wunused-but-set-variable]
tnetpost.cc:40:21: warning: variable 'chi0' set but not used [-Wunused-but-set-variable]
tnetpost.cc:40:27: warning: variable 'delta' set but not used [-Wunused-but-set-variable]
tnetpost.cc:40:34: warning: variable 'rho' set but not used [-Wunused-but-set-variable]
tnetpost.cc:41:9: warning: variable 'Rf_beta' set but not used [-Wunused-but-set-variable]
tnetpost.cc:44:9: warning: variable 'ne' set but not used [-Wunused-but-set-variable]
tnetpost.cc:150:10: warning: variable 'minDump' set but not used [-Wunused-but-set-variable]
g++ -m32 -shared -s -static-libgcc -o ternarynet.dll tmp.def tnetfit.o tnetfuncs.o tnetpost.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/ternarynet.buildbin-libdir/ternarynet/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'ternarynet.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'ternarynet' ...
** libs
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c tnetfit.cc -o tnetfit.o
tnetfit.cc: In function 'SEXPREC* tnetfit(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetfit.cc:24:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
tnetfit.cc:24:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
tnetfit.cc:24:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
tnetfit.cc:73:39: warning: unused variable 'tempi' [-Wunused-variable]
tnetfit.cc:311:53: warning: 'newScore' may be used uninitialized in this function [-Wuninitialized]
tnetfit.cc:207:42: warning: 'muci_old' may be used uninitialized in this function [-Wuninitialized]
tnetfit.cc:202:44: warning: 'sigmaci' may be used uninitialized in this function [-Wuninitialized]
tnetfit.cc:207:42: warning: 'sigma0' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c tnetfuncs.cc -o tnetfuncs.o
tnetfuncs.cc: In function 'double AttractorDistanceForced(int, int, int, int, double, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:469:5: warning: unused variable 'tableWidth' [-Wunused-variable]
tnetfuncs.cc:477:5: warning: unused variable 'ipause' [-Wunused-variable]
tnetfuncs.cc: In function 'double initialTemp(double, int, int, int, int, int, double, double, double, int, const double*, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:567:6: warning: unused variable 'ipause' [-Wunused-variable]
tnetfuncs.cc:571:16: warning: unused variable 'i' [-Wunused-variable]
g++ -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c tnetpost.cc -o tnetpost.o
tnetpost.cc: In function 'SEXPREC* tnetpost(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
tnetpost.cc:25:9: warning: unused variable 'ipause' [-Wunused-variable]
tnetpost.cc:27:9: warning: unused variable 'm0fit' [-Wunused-variable]
tnetpost.cc:28:32: warning: variable 'minScore' set but not used [-Wunused-but-set-variable]
tnetpost.cc:28:42: warning: unused variable 'finalScore' [-Wunused-variable]
tnetpost.cc:30:9: warning: unused variable 'l0' [-Wunused-variable]
tnetpost.cc:30:13: warning: unused variable 'stage_count' [-Wunused-variable]
tnetpost.cc:30:26: warning: unused variable 'tempi' [-Wunused-variable]
tnetpost.cc:30:33: warning: unused variable 'jtrans' [-Wunused-variable]
tnetpost.cc:30:41: warning: unused variable 'nTransition' [-Wunused-variable]
tnetpost.cc:36:21: warning: variable 'xSeedFit' set but not used [-Wunused-but-set-variable]
tnetpost.cc:38:9: warning: variable 'perturbationType' set but not used [-Wunused-but-set-variable]
tnetpost.cc:38:27: warning: variable 'scoreType' set but not used [-Wunused-but-set-variable]
tnetpost.cc:38:38: warning: variable 'backupStage' set but not used [-Wunused-but-set-variable]
tnetpost.cc:39:9: warning: variable 'maxStage' set but not used [-Wunused-but-set-variable]
tnetpost.cc:39:19: warning: variable 'maxTransition' set but not used [-Wunused-but-set-variable]
tnetpost.cc:40:12: warning: variable 'epsilon' set but not used [-Wunused-but-set-variable]
tnetpost.cc:40:21: warning: variable 'chi0' set but not used [-Wunused-but-set-variable]
tnetpost.cc:40:27: warning: variable 'delta' set but not used [-Wunused-but-set-variable]
tnetpost.cc:40:34: warning: variable 'rho' set but not used [-Wunused-but-set-variable]
tnetpost.cc:41:9: warning: variable 'Rf_beta' set but not used [-Wunused-but-set-variable]
tnetpost.cc:44:9: warning: variable 'ne' set but not used [-Wunused-but-set-variable]
tnetpost.cc:150:10: warning: variable 'minDump' set but not used [-Wunused-but-set-variable]
g++ -m64 -shared -s -static-libgcc -o ternarynet.dll tmp.def tnetfit.o tnetfuncs.o tnetpost.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/ternarynet.buildbin-libdir/ternarynet/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ternarynet' as ternarynet_1.3.2.zip
* DONE (ternarynet)