Package: illuminaio

Version: 0.1.5

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch illuminaio_0.1.5.tar.gz

StartedAt: 2013-03-25 03:10:34 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:11:29 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 54.1 seconds

RetCode: 0

Status:  OK

CheckDir: illuminaio.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/illuminaio.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'illuminaio/DESCRIPTION' ... OK
* this is package 'illuminaio' version '0.1.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'illuminaio' can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [14s/14s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
readIDAT 12.467  0.518   13.04
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'runTests.R' [8s/8s]
 [8s/8s] OK
* checking PDF version of manual ... OK

* installing *source* package 'illuminaio' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (illuminaio)

name	user	system	elapsed
readIDAT	12.467	0.518	13.040