Package: flowViz

Version: 1.23.3

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings flowViz_1.23.3.tar.gz

StartedAt: 2013-03-25 01:39:59 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 01:44:59 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 300.0 seconds

RetCode: 0

Status:  OK

CheckDir: flowViz.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/flowViz.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowViz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowViz’ version ‘1.23.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowViz’ can be installed ... [14s/15s] OK
* checking installed package size ... NOTE
  installed size is  9.6Mb
  sub-directories of 1Mb or more:
    doc   9.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gltext: no visible global function definition for ‘unit’
gltext: no visible global function definition for ‘gpar’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [158s/162s] OK
Examples with CPU or elapsed time > 5s
                         user system elapsed
xyplot                 39.418  0.224  40.051
ecdfplot               38.059  0.384  39.158
latticeMethods-flowSet 21.501  0.416  22.816
densityplot            18.473  0.344  19.317
splom                  16.869  0.232  17.620
timeLinePlot-methods    9.825  0.096   9.986
contour-methods         4.888  0.120   5.009
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/flowViz.Rcheck/00check.log’
for details.

* installing *source* package ‘flowViz’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘filters.Rnw’ 
** testing if installed package can be loaded
* DONE (flowViz)

name	user	system	elapsed
contour-methods	4.888	0.120	5.009
densityplot	18.473	0.344	19.317
ecdfplot	38.059	0.384	39.158
flowPlot	1.232	0.060	1.296
flowViz-package	0.012	0.000	0.010
flowViz.par.get	0.024	0.000	0.024
latticeMethods-flowSet	21.501	0.416	22.816
splom	16.869	0.232	17.620
timeLinePlot-methods	9.825	0.096	9.986
xyplot	39.418	0.224	40.051