Package: clst

Version: 1.7.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch clst_1.7.0.tar.gz

StartedAt: 2013-03-25 01:49:59 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 01:51:07 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 68.0 seconds

RetCode: 0

Status:  OK

CheckDir: clst.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/clst.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'clst/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'clst' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'clst' can be installed ... [3s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Foreign function call with 'PACKAGE' argument in a different package:
  .C("ROC", ..., PACKAGE = "ROC")
See the chapter 'System and foreign language interfaces' of the
'Writing R Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [24s/25s] OK
Examples with CPU or elapsed time > 5s
                user system elapsed
scaleDistPlot 19.279  2.246  21.576
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'runalltests.R' [10s/13s]
 [10s/13s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/clst.Rcheck/00check.log'
for details.

* installing *source* package 'clst' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'clstDemo.Rnw' 
** testing if installed package can be loaded
* DONE (clst)

name	user	system	elapsed
actino	0.043	0.011	0.053
bvseqs	0.010	0.005	0.015
classify	0.452	0.059	0.514
clst-package	0.339	0.043	0.390
findThreshold	0.125	0.023	0.151
plotDistances	0.464	0.053	0.517
printClst	0.014	0.010	0.024
scaleDistPlot	19.279	2.246	21.576
strep	0.005	0.006	0.010