Package: MLInterfaces

Version: 1.39.5

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MLInterfaces_1.39.5.tar.gz

StartedAt: 2013-03-25 03:38:11 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:43:14 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 302.7 seconds

RetCode: 0

Status:  OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/MLInterfaces.Rcheck'
* using R Under development (unstable) (2013-02-26 r62077)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'MLInterfaces/DESCRIPTION' ... OK
* this is package 'MLInterfaces' version '1.39.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'MLInterfaces' can be installed ... [22s/23s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'multicore'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [65s/59s] OK
Examples with CPU or elapsed time > 5s
                         user system elapsed
MLearn-new             27.802  2.957  29.671
fsHistory               4.675  0.345   0.233
classifierOutput-class  3.986  0.725   5.117
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.12-bioc/meat/MLInterfaces.Rcheck/00check.log'
for details.

* installing *source* package 'MLInterfaces' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'MLInterfaces.Rnw' 
   'MLint_devel.Rnw' 
   'MLprac2_2.Rnw' 
   'xvalComputerClusters.Rnw' 
** testing if installed package can be loaded
* DONE (MLInterfaces)

name	user	system	elapsed
MLearn-new	27.802	2.957	29.671
RAB	0.184	0.018	0.202
balKfold.xvspec	0.032	0.023	0.055
classifierOutput-class	3.986	0.725	5.117
clusteringOutput-class	0.023	0.031	0.054
confuMat-methods	0.424	0.055	0.482
fs.absT	0.037	0.017	0.055
fsHistory	4.675	0.345	0.233
learnerSchema-class	0.003	0.011	0.015
planarPlot-methods	3.477	0.525	4.077
predict.classifierOutput	4.338	0.216	4.577
raboostCont-class	0.004	0.004	0.007
varImpStruct-class	1.151	0.114	1.279
xvalLoop	0.009	0.019	0.028
xvalSpec	0.275	0.270	0.454