GeneGroupAnalysis 1.5.0
Alejandro Quiroz-Zarate
| Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneGroupAnalysis | | Last Changed Rev: 70052 / Revision: 74774 | | Last Changed Date: 2012-10-01 15:43:56 -0700 (Mon, 01 Oct 2012) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneGroupAnalysis.buildbin-libdir GeneGroupAnalysis_1.5.0.tar.gz'
>>>>>>>
* installing *source* package 'GeneGroupAnalysis' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c ConditionalsAll.c -o ConditionalsAll.o
In file included from Densidades.h:8,
from InvWishart.h:8,
from ConditionalsAll.c:8:
OpMat.h:20:2: warning: "/*" within comment
OpMat.h:40:2: warning: "/*" within comment
OpMat.h:58:2: warning: "/*" within comment
OpMat.h:76:2: warning: "/*" within comment
OpMat.h:95:2: warning: "/*" within comment
OpMat.h:119:2: warning: "/*" within comment
OpMat.h:153:2: warning: "/*" within comment
OpMat.h:197:2: warning: "/*" within comment
ConditionalsAll.c:42:3: warning: "/*" within comment
ConditionalsAll.c:193:3: warning: "/*" within comment
ConditionalsAll.c:342:3: warning: "/*" within comment
ConditionalsAll.c:460:3: warning: "/*" within comment
ConditionalsAll.c:646:3: warning: "/*" within comment
libMatInv.h: In function 'LUbksb':
libMatInv.h:95: warning: 'ii' may be used uninitialized in this function
libMatInv.h: In function 'LUdcmp':
libMatInv.h:13: warning: 'imax' may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneGroupAnalysis.so ConditionalsAll.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'GeneGroupAnalysis.Rnw' using 'UTF-8'
** testing if installed package can be loaded
* DONE (GeneGroupAnalysis)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/i386/GeneGroupAnalysis.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/i386/GeneGroupAnalysis.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/i386/GeneGroupAnalysis.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/i386/GeneGroupAnalysis.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/i386/GeneGroupAnalysis.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=GeneGroupAnalysis.buildbin-libdir --libs-only GeneGroupAnalysis_1.5.0.tar.gz'
>>>>>>>
* installing *source* package 'GeneGroupAnalysis' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c ConditionalsAll.c -o ConditionalsAll.o
In file included from Densidades.h:8,
from InvWishart.h:8,
from ConditionalsAll.c:8:
OpMat.h:20:2: warning: "/*" within comment
OpMat.h:40:2: warning: "/*" within comment
OpMat.h:58:2: warning: "/*" within comment
OpMat.h:76:2: warning: "/*" within comment
OpMat.h:95:2: warning: "/*" within comment
OpMat.h:119:2: warning: "/*" within comment
OpMat.h:153:2: warning: "/*" within comment
OpMat.h:197:2: warning: "/*" within comment
ConditionalsAll.c:42:3: warning: "/*" within comment
ConditionalsAll.c:193:3: warning: "/*" within comment
ConditionalsAll.c:342:3: warning: "/*" within comment
ConditionalsAll.c:460:3: warning: "/*" within comment
ConditionalsAll.c:646:3: warning: "/*" within comment
libMatInv.h: In function 'LUbksb':
libMatInv.h:95: warning: 'ii' may be used uninitialized in this function
libMatInv.h: In function 'LUdcmp':
libMatInv.h:13: warning: 'imax' may be used uninitialized in this function
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneGroupAnalysis.so ConditionalsAll.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/x86_64
* DONE (GeneGroupAnalysis)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/x86_64/GeneGroupAnalysis.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/x86_64/GeneGroupAnalysis.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/x86_64/GeneGroupAnalysis.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/x86_64/GeneGroupAnalysis.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GeneGroupAnalysis.buildbin-libdir/GeneGroupAnalysis/libs/x86_64/GeneGroupAnalysis.so"