ADaCGH2 1.9.0
Ramon Diaz-Uriarte
| Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ADaCGH2 | | Last Changed Rev: 74736 / Revision: 74774 | | Last Changed Date: 2013-03-23 04:33:47 -0700 (Sat, 23 Mar 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ADaCGH2.buildbin-libdir ADaCGH2_1.9.0.tar.gz'
>>>>>>>
* installing *source* package 'ADaCGH2' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:65: warning: unused variable 'totalNorm'
r_haarseg.c:152:8: warning: "/*" within comment
r_haarseg.c:176:8: warning: "/*" within comment
r_haarseg.c: In function 'ad_FindLocalPeaks':
r_haarseg.c:128: warning: unused variable 'j'
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:64: warning: 'highNonNormed' may be used uninitialized in this function
r_haarseg.c:63: warning: 'lowNonNormed' may be used uninitialized in this function
r_haarseg.c:60: warning: 'highWeightSum' may be used uninitialized in this function
r_haarseg.c:59: warning: 'lowWeightSum' may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ADaCGH2.so r_haarseg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Warning: '.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
Warning: '.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
Warning: '.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
Setting adacgh_changepoints to DNAcopy:::changepoints
Setting adacgh_trimmed.variance to DNAcopy:::trimmed.variance
** help
*** installing help indices
** building package indices
** installing vignettes
'ADaCGH2.Rnw' using 'latin1'
** testing if installed package can be loaded
Warning: '.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
Warning: '.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
Warning: '.find.package' is deprecated.
Use 'find.package' instead.
See help("Deprecated")
* DONE (ADaCGH2)
>>>>>>>
>>>>>>> FIXING LINKS FOR ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386/ADaCGH2.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386/ADaCGH2.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=ADaCGH2.buildbin-libdir --libs-only ADaCGH2_1.9.0.tar.gz'
>>>>>>>
* installing *source* package 'ADaCGH2' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:65: warning: unused variable 'totalNorm'
r_haarseg.c:152:8: warning: "/*" within comment
r_haarseg.c:176:8: warning: "/*" within comment
r_haarseg.c: In function 'ad_FindLocalPeaks':
r_haarseg.c:128: warning: unused variable 'j'
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:64: warning: 'highNonNormed' may be used uninitialized in this function
r_haarseg.c:63: warning: 'lowNonNormed' may be used uninitialized in this function
r_haarseg.c:60: warning: 'highWeightSum' may be used uninitialized in this function
r_haarseg.c:59: warning: 'lowWeightSum' may be used uninitialized in this function
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ADaCGH2.so r_haarseg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64
* DONE (ADaCGH2)
>>>>>>>
>>>>>>> FIXING LINKS FOR ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64/ADaCGH2.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64/ADaCGH2.so"