Package: geneLenDataBase

Version: 0.99.10

Command: rm -rf geneLenDataBase.buildbin-libdir && mkdir geneLenDataBase.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=geneLenDataBase.buildbin-libdir geneLenDataBase_0.99.10.tar.gz >geneLenDataBase-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=geneLenDataBase.buildbin-libdir --install="check:geneLenDataBase-install.out" --force-multiarch --no-vignettes --timings geneLenDataBase_0.99.10.tar.gz && mv geneLenDataBase.buildbin-libdir/* geneLenDataBase.Rcheck/ && rmdir geneLenDataBase.buildbin-libdir

StartedAt: 2013-03-24 12:15:18 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 12:29:47 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 869.3 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: geneLenDataBase.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.11-data-experiment/meat/geneLenDataBase.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'geneLenDataBase/DESCRIPTION' ... OK
* this is package 'geneLenDataBase' version '0.99.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'geneLenDataBase' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.5Mb
  sub-directories of 1Mb or more:
    data  99.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/anoCar1.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/anoCar1.genscan.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/anoCar1.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/anoGam1.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/anoGam1.geneid.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/anoGam1.genscan.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/apiMel1.genscan.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/apiMel2.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/apiMel2.geneid.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/apiMel2.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/aplCal1.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau2.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau2.geneid.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau2.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau2.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau2.sgpGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau3.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau3.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau3.geneid.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau3.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau3.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau3.sgpGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau4.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau4.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau4.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau4.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/bosTau4.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/braFlo1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/caeJap1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/caePb1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/caePb2.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/caeRem2.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/caeRem3.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/calJac1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/calJac1.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/calJac1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam1.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam1.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam1.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam1.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam2.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam2.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam2.genscan.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam2.nscanGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam2.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/canFam2.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/cavPor3.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/cavPor3.genscan.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/cavPor3.nscanGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/cavPor3.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/cb1.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/cb3.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ce2.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ce2.geneid.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ce2.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ce4.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ce4.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ce4.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ce6.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ce6.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ce6.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ce6.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ci1.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ci1.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ci1.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ci2.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ci2.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ci2.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/ci2.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer3.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer3.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer3.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer4.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer4.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer4.genscan.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer4.nscanGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer4.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer5.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer5.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer5.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer5.vegaGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer5.vegaPseudoGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer6.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer6.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer6.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/danRer6.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/dm1.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/equCab2.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/equCab2.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/felCat3.nscanGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/felCat3.sgpGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/felCat3.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/fr1.genscan.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/fr2.ensGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/galGal2.geneid.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/galGal2.genscan.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/galGal3.geneSymbol.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/galGal3.genscan.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/galGal3.nscanGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/galGal3.refGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/galGal3.xenoRefGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/hg17.knownGene.LENGTH.Rd':
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Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/hg17.refGene.LENGTH.Rd':
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  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rheMac2.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rheMac2.sgpGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rheMac2.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn3.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn3.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn3.geneid.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn3.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn3.knownGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn3.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn3.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn3.sgpGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn3.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn4.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn4.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn4.geneid.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn4.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn4.knownGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn4.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn4.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn4.sgpGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/rn4.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/sacCer1.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/sacCer2.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/strPur1.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/strPur1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/strPur1.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/strPur1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/strPur2.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/strPur2.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/strPur2.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/strPur2.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/taeGut1.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/taeGut1.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/taeGut1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/taeGut1.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/taeGut1.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/taeGut1.xenoRefGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/tetNig1.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/tetNig1.geneid.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/tetNig1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/tetNig1.nscanGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/tetNig2.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/xenTro1.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/xenTro2.ensGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/xenTro2.geneSymbol.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/xenTro2.genscan.LENGTH.Rd':
  'downloadLengthFromUCSC'

Missing link(s) in documentation object 'D:/biocbld/bbs-2.11-data-experiment/tmpdir/RtmpIRswsh/R.INSTALLf247c865dcd/geneLenDataBase/man/xenTro2.refGene.LENGTH.Rd':
  'downloadLengthFromUCSC'

See the information in section 'Cross-references' of the 'Writing R
Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
supportedGenomes 0.25   0.06   31.89
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
supportedGenomes       0.42   0.13    6.34
anoGam1.genscan.LENGTH 0.31   0.03    7.08
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.11-data-experiment/meat/geneLenDataBase.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'geneLenDataBase' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'geneLenDataBase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'geneLenDataBase' as geneLenDataBase_0.99.10.zip

* DONE (geneLenDataBase)