cgdv17 0.0.19
VJ Carey
| Snapshot Date: 2013-03-24 09:15:27 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/cgdv17 | | Last Changed Rev: 2187 / Revision: 2286 | | Last Changed Date: 2013-01-09 10:56:08 -0800 (Wed, 09 Jan 2013) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | [ ERROR ] | skipped | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | ERROR | skipped | skipped |
| perceval | Mac OS X Leopard (10.5.8) / i386 | ERROR | skipped | skipped |
* checking for file ‘cgdv17/DESCRIPTION’ ... OK
* preparing ‘cgdv17’:
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: VariantAnnotation
Loading required package: GenomicRanges
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following object(s) are masked from ‘package:stats’:
xtabs
The following object(s) are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
rownames, sapply, setdiff, table, tapply, union, unique
Loading required package: IRanges
Loading required package: Rsamtools
Loading required package: Biostrings
Loading required package: org.Hs.eg.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
‘browseVignettes()’. To cite Bioconductor, see
‘citation("Biobase")’, and for packages ‘citation("pkgname")’.
Attaching package: ‘Biobase’
The following object(s) are masked from ‘package:VariantAnnotation’:
samples
Loading required package: DBI
Loading required package: GGtools
Loading required package: stats4
Loading required package: GGBase
Loading required package: snpStats
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice
Attaching package: ‘Matrix’
The following object(s) are masked from ‘package:IRanges’:
expand
Attaching package: ‘GGtools’
The following object(s) are masked from ‘package:stats’:
getCall
Loading required package: TxDb.Hsapiens.UCSC.hg19.knownGene
Loading required package: GenomicFeatures
Loading required package: parallel
Error: processing vignette ‘cgdv.Rnw’ failed with diagnostics:
chunk 9 (label = lkco)
Error in thisrd[IRanges::overlapsAny(ranges(thisrd), ranges(delim))] :
error in evaluating the argument ‘i’ in selecting a method for function ‘[’: Error: ‘overlapsAny’ is not an exported object from ‘namespace:IRanges’
Execution halted