Package: bsseqData

Version: 0.1.2

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings bsseqData_0.1.2.tar.gz

StartedAt: 2013-03-24 11:40:20 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 11:42:18 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 117.1 seconds

RetCode: 0

Status:  OK

CheckDir: bsseqData.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/bsseqData.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘bsseqData/DESCRIPTION’ ... OK
* this is package ‘bsseqData’ version ‘0.1.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘bsseqData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 146.3Mb
  sub-directories of 1Mb or more:
    data   85.4Mb
    umtab  60.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/bsseqData.Rcheck/00check.log’
for details.

* installing *source* package ‘bsseqData’ ...
** data
**  moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (bsseqData)

name	user	system	elapsed
BS.cancer.ex	1.388	1.196	2.649
BS.cancer.ex.fit	1.448	1.244	2.859
BS.cancer.ex.tstat	0.432	0.124	0.667
keepLoci.ex	0.000	0.004	0.005