Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S [T] U  V  W  X  Y  Z 

Package 576/609HostnameOS / ArchBUILDCHECKBUILD BIN
ternarynet 1.2.0
Matthew N. McCall
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/ternarynet
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: ternarynet
Version: 1.2.0
Command: rm -rf ternarynet.buildbin-libdir && mkdir ternarynet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ternarynet_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R ternarynet.buildbin-libdir
StartedAt: 2013-03-25 02:10:08 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:10:29 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 21.7 seconds
RetCode: 0
Status:  OK 
PackageFile: ternarynet_1.2.0.tgz
PackageFileSize: 282.9 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ternarynet.buildbin-libdir ternarynet_1.2.0.tar.gz'
>>>>>>> 

* installing *source* package 'ternarynet' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c tnetfit.cc -o tnetfit.o
tnetfit.cc: In function 'SEXPREC* tnetfit(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
tnetfit.cc:73: warning: unused variable 'tempi'
tnetfit.cc:98: warning: 'muci_old' may be used uninitialized in this function
tnetfit.cc:98: warning: 'sigmaci' may be used uninitialized in this function
tnetfit.cc:98: warning: 'sigma0' may be used uninitialized in this function
tnetfit.cc:77: warning: 'newScore' may be used uninitialized in this function
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c tnetfuncs.cc -o tnetfuncs.o
tnetfuncs.cc: In function 'double AttractorDistanceForced(int, int, int, int, double, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:427: warning: unused variable 'tableWidth'
tnetfuncs.cc:435: warning: unused variable 'ipause'
tnetfuncs.cc: In function 'double initialTemp(double, int, int, int, int, int, double, double, double, int, const double*, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:517: warning: unused variable 'ipause'
tnetfuncs.cc:521: warning: unused variable 'i'
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c tnetpost.cc -o tnetpost.o
tnetpost.cc: In function 'SEXPREC* tnetpost(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
tnetpost.cc:25: warning: unused variable 'ipause'
tnetpost.cc:27: warning: unused variable 'm0fit'
tnetpost.cc:28: warning: unused variable 'finalScore'
tnetpost.cc:30: warning: unused variable 'l0'
tnetpost.cc:30: warning: unused variable 'stage_count'
tnetpost.cc:30: warning: unused variable 'tempi'
tnetpost.cc:30: warning: unused variable 'jtrans'
tnetpost.cc:30: warning: unused variable 'nTransition'
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ternarynet.so tnetfit.o tnetfuncs.o tnetpost.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/ternarynet.buildbin-libdir/ternarynet/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'ternarynet.Rnw' 
** testing if installed package can be loaded

* DONE (ternarynet)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ternarynet.buildbin-libdir/ternarynet/libs/i386/ternarynet.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "ternarynet.buildbin-libdir/ternarynet/libs/i386/ternarynet.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "ternarynet.buildbin-libdir/ternarynet/libs/i386/ternarynet.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "ternarynet.buildbin-libdir/ternarynet/libs/i386/ternarynet.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "ternarynet.buildbin-libdir/ternarynet/libs/i386/ternarynet.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=ternarynet.buildbin-libdir --libs-only ternarynet_1.2.0.tar.gz'
>>>>>>> 

* installing *source* package 'ternarynet' ...
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c tnetfit.cc -o tnetfit.o
tnetfit.cc: In function 'SEXPREC* tnetfit(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
tnetfit.cc:73: warning: unused variable 'tempi'
tnetfit.cc:98: warning: 'muci_old' may be used uninitialized in this function
tnetfit.cc:98: warning: 'sigmaci' may be used uninitialized in this function
tnetfit.cc:98: warning: 'sigma0' may be used uninitialized in this function
tnetfit.cc:77: warning: 'newScore' may be used uninitialized in this function
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c tnetfuncs.cc -o tnetfuncs.o
tnetfuncs.cc: In function 'double AttractorDistanceForced(int, int, int, int, double, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:427: warning: unused variable 'tableWidth'
tnetfuncs.cc:435: warning: unused variable 'ipause'
tnetfuncs.cc: In function 'double initialTemp(double, int, int, int, int, int, double, double, double, int, const double*, int*, int*, int*, const double*, const int*)':
tnetfuncs.cc:517: warning: unused variable 'ipause'
tnetfuncs.cc:521: warning: unused variable 'i'
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c tnetpost.cc -o tnetpost.o
tnetpost.cc: In function 'SEXPREC* tnetpost(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
tnetpost.cc:25: warning: unused variable 'ipause'
tnetpost.cc:27: warning: unused variable 'm0fit'
tnetpost.cc:28: warning: unused variable 'finalScore'
tnetpost.cc:30: warning: unused variable 'l0'
tnetpost.cc:30: warning: unused variable 'stage_count'
tnetpost.cc:30: warning: unused variable 'tempi'
tnetpost.cc:30: warning: unused variable 'jtrans'
tnetpost.cc:30: warning: unused variable 'nTransition'
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ternarynet.so tnetfit.o tnetfuncs.o tnetpost.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/ternarynet.buildbin-libdir/ternarynet/libs/x86_64

* DONE (ternarynet)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ternarynet.buildbin-libdir/ternarynet/libs/x86_64/ternarynet.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "ternarynet.buildbin-libdir/ternarynet/libs/x86_64/ternarynet.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "ternarynet.buildbin-libdir/ternarynet/libs/x86_64/ternarynet.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "ternarynet.buildbin-libdir/ternarynet/libs/x86_64/ternarynet.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "ternarynet.buildbin-libdir/ternarynet/libs/x86_64/ternarynet.so"