Package: plateCore

Version: 1.15.0

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch plateCore_1.15.0.tar.gz

StartedAt: 2012-06-21 02:41:13 -0700 (Thu, 21 Jun 2012)

EndedAt: 2012-06-21 02:45:32 -0700 (Thu, 21 Jun 2012)

EllapsedTime: 259.3 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/plateCore.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.15.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
panel.xyplot.flowPlate: warning in filterBoundary(filter =
  filter[[nm]], parameters = c(channel.x.name, channel.y.name), frame =
  frames[[nm]]): partial argument match of 'filter' to 'filter.object'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/plateCore.Rcheck/00check.log'
for details.

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'plateCoreVig.Rnw' 
** testing if installed package can be loaded

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	5.236	0.249	5.667
applyControlGates-methods	16.218	0.374	17.377
compensate-methods	6.587	0.444	7.144
compensationSet	0.419	0.046	0.476
densityplot-methods	2.007	0.099	2.115
fixAutoFl-methods	7.354	0.663	8.202
flowPlate-class	3.740	0.233	4.011
flowPlate-method	3.922	0.233	4.215
fpbind-methods	9.133	0.582	9.788
getGroups-methods	1.911	0.116	2.042
gutterPlot-methods	1.808	0.125	1.966
mfiPlot-methods	16.535	0.373	17.033
on-methods	11.164	0.402	11.767
panel.densityplot.flowPlate	2.211	0.112	2.398
panel.xyplot.flowPlate	1.942	0.104	2.397
plateCore-package	3.769	0.247	4.194
plateSet-methods	3.757	0.241	4.275
plotPlate-methods	4.519	0.317	4.951
prepanel.densityplot.flowPlate	2.089	0.109	2.272
prepanel.xyplot.flowPlate	2.067	0.103	2.264
setControlGates-methods	4.320	0.251	4.601
summaryStats-methods	17.065	0.379	18.200
wellAnnotation-methods	1.724	0.092	1.836
xyplot-methods	1.914	0.094	2.033