Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O [P] Q  R  S  T  U  V  W  X  Y  Z 

Package 436/609HostnameOS / ArchBUILDCHECKBUILD BIN
pdInfoBuilder 1.22.0
Benilton Carvalho
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/pdInfoBuilder
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS [ OK ]

Summary

Package: pdInfoBuilder
Version: 1.22.0
Command: rm -rf pdInfoBuilder.buildbin-libdir && mkdir pdInfoBuilder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pdInfoBuilder_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R pdInfoBuilder.buildbin-libdir
StartedAt: 2013-03-25 01:59:59 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 02:00:20 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 21.2 seconds
RetCode: 0
Status:  OK 
PackageFile: pdInfoBuilder_1.22.0.tgz
PackageFileSize: 487.1 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=pdInfoBuilder.buildbin-libdir pdInfoBuilder_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package 'pdInfoBuilder' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c pdInfoBuilder.c -o pdInfoBuilder.o
In file included from pdInfoBuilder.h:4,
                 from pdInfoBuilder.c:1:
/Library/Frameworks/R.framework/Resources/include/R_ext/RConverters.h:32:2: warning: #warning is a GCC extension
/Library/Frameworks/R.framework/Resources/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0"
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pdInfoBuilder.so pdInfoBuilder.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'BuildingPDInfoPkgs.Rnw' 
   'howto-AffymetrixMapping.Rnw' 
** testing if installed package can be loaded

* DONE (pdInfoBuilder)


>>>>>>> 
>>>>>>> FIXING LINKS FOR pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/i386/pdInfoBuilder.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/i386/pdInfoBuilder.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/i386/pdInfoBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/i386/pdInfoBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/i386/pdInfoBuilder.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=pdInfoBuilder.buildbin-libdir --libs-only pdInfoBuilder_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package 'pdInfoBuilder' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c pdInfoBuilder.c -o pdInfoBuilder.o
In file included from pdInfoBuilder.h:4,
                 from pdInfoBuilder.c:1:
/Library/Frameworks/R.framework/Resources/include/R_ext/RConverters.h:32:2: warning: #warning is a GCC extension
/Library/Frameworks/R.framework/Resources/include/R_ext/RConverters.h:32:2: warning: #warning "R_ext/RConverters.h was deprecated in R 2.15.1 and will be removed in R 3.0.0"
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pdInfoBuilder.so pdInfoBuilder.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/x86_64

* DONE (pdInfoBuilder)


>>>>>>> 
>>>>>>> FIXING LINKS FOR pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/x86_64/pdInfoBuilder.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/x86_64/pdInfoBuilder.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/x86_64/pdInfoBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/x86_64/pdInfoBuilder.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/x86_64/pdInfoBuilder.so"