Package: miRNApath

Version: 1.18.0

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings miRNApath_1.18.0.tar.gz

StartedAt: 2013-03-25 03:06:09 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:06:49 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 40.7 seconds

RetCode: 0

Status:  OK

CheckDir: miRNApath.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/miRNApath.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNApath/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘miRNApath’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘miRNApath’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
             user system elapsed
mirnaTable 19.269  0.024    19.5
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘miRNApath’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘miRNApath.Rnw’ 
** testing if installed package can be loaded

* DONE (miRNApath)

name	user	system	elapsed
checkColumns	0	0	0
convertFoldChange	0	0	0
filtermirnapath	0.096	0.000	0.095
loadmirnapath	0.060	0.004	0.064
loadmirnapathways	0.152	0.008	0.160
loadmirnatogene	0.212	0.004	0.236
miRNApath-package	0	0	0
mirnaTable	19.269	0.024	19.500
mirnaobj	0.020	0.004	0.032
mirnapath-class	0.028	0.000	0.026
runEnrichment	0	0	0