Package: ibh

Version: 1.6.0

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ibh_1.6.0.tar.gz

StartedAt: 2013-03-25 00:03:15 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 00:03:38 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 22.5 seconds

RetCode: 0

Status:  OK

CheckDir: ibh.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/ibh.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ibh/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ibh' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'ibh' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'ibh' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'ibh.Rnw' 
** testing if installed package can be loaded

* DONE (ibh)

name	user	system	elapsed
findEntry	0.037	0.006	0.064
ibh-package	2.525	0.134	2.753
ibh	0.016	0.001	0.018
ibhBioGRID	0.279	0.010	0.298
ibhClusterEval	0.514	0.065	0.603
ibhClusterEvalBioGRID	1.008	0.067	1.090
ibhForMultipleGeneLists	0.028	0.005	0.034
ibhForMultipleGeneListsBioGRID	0.298	0.006	0.312
readDirectedInteractionsFromCsv	0	0	0
readUndirectedInteractionsFromCsv	0	0	0