Package: hyperdraw

Version: 1.9.1

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch hyperdraw_1.9.1.tar.gz

StartedAt: 2012-06-21 00:59:19 -0700 (Thu, 21 Jun 2012)

EndedAt: 2012-06-21 01:00:19 -0700 (Thu, 21 Jun 2012)

EllapsedTime: 60.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: hyperdraw.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/hyperdraw.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'hyperdraw/DESCRIPTION' ... OK
* this is package 'hyperdraw' version '1.9.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'hyperdraw' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
  generic 'plot' and siglist 'RagraphBPH,ANY'
  generic 'plot' and siglist 'graphBPH,ANY'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/hyperdraw.Rcheck/00check.log'
for details.

* installing *source* package 'hyperdraw' ...
** R
** inst
** preparing package for lazy loading
Creating a new generic function for 'graphLayout' in package 'hyperdraw'
** help
*** installing help indices
** building package indices
** installing vignettes
   'hyperdraw.Rnw' 
** testing if installed package can be loaded

* DONE (hyperdraw)

name	user	system	elapsed
RagraphBPH-class	1.405	0.022	1.451
graphBPH-class	0.818	0.004	0.832
graphLayout	0.015	0.000	0.015