Package: ddCt

Version: 1.11.0

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ddCt_1.11.0.tar.gz

StartedAt: 2012-06-20 23:14:24 -0700 (Wed, 20 Jun 2012)

EndedAt: 2012-06-20 23:15:36 -0700 (Wed, 20 Jun 2012)

EllapsedTime: 72.0 seconds

RetCode: 0

Status:  OK

CheckDir: ddCt.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/ddCt.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ddCt/DESCRIPTION' ... OK
* this is package 'ddCt' version '1.11.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'ddCt' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ddCtReport: warning in write.htmltable(cbind(rownames(lv), lv), title =
  "Level", file = file.path(html.path, "level")): partial argument
  match of 'file' to 'filename'
ddCtReport: warning in write.htmltable(cbind(rownames(Ct), Ct), title =
  "Ct", file = file.path(html.path, "Ct")): partial argument match of
  'file' to 'filename'
ddCtReport: warning in write.htmltable(cbind(rownames(dCtValues),
  dCtValues), title = "dCt", file = file.path(html.path, "dCt")):
  partial argument match of 'file' to 'filename'
ddCtReport: warning in write.htmltable(cbind(rownames(ddCtValues),
  ddCtValues), title = "ddCt", file = file.path(html.path, "ddCt")):
  partial argument match of 'file' to 'filename'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'unit.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/ddCt.Rcheck/00check.log'
for details.

* installing *source* package 'ddCt' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'summary' from package 'base' in package 'ddCt'
** help
*** installing help indices
** building package indices
** installing vignettes
   'RT-PCR-Script-ddCt.Rnw' 
   'rtPCR-usage.Rnw' 
   'rtPCR.Rnw' 
** testing if installed package can be loaded

* DONE (ddCt)

name	user	system	elapsed
InputReader-class	0.003	0.001	0.003
SDMFrame-class	0.059	0.007	0.067
SDMFrame	0.014	0.002	0.037
barploterrbar	0.010	0.001	0.027
ddCtExpression-class	0.223	0.005	0.243
ddCtExpression-methods	0.089	0.002	0.123
elistWrite-methods	0.092	0.002	0.097
errBarchartParameter-class	0.000	0.000	0.001
getDir	0.001	0.000	0.000
replaceVectorByEquality	0.000	0.001	0.000