crlmm 1.16.9
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
| Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/crlmm | | Last Changed Rev: 71383 / Revision: 74773 | | Last Changed Date: 2012-11-21 06:32:51 -0800 (Wed, 21 Nov 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
install for i386
* installing *source* package 'crlmm' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c gtypeCaller.c -o gtypeCaller.o
gtypeCaller.c: In function 'gtypeCallerPart1':
gtypeCaller.c:91:83: warning: variable 'ptr2ncIndexes' set but not used [-Wunused-but-set-variable]
gtypeCaller.c: In function 'gtypeCallerPart2':
gtypeCaller.c:315:89: warning: variable 'ptr2trim' set but not used [-Wunused-but-set-variable]
gtypeCaller.c:314:83: warning: variable 'ptr2ncIndexes' set but not used [-Wunused-but-set-variable]
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124:15: warning: unused variable 'n_ignore' [-Wunused-variable]
utils.c: In function 'normalizeBAF':
utils.c:178:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
utils.c:180:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m32 -shared -s -static-libgcc -o crlmm.dll tmp.def gtypeCaller.o init.o trimmed.o utils.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/crlmm.buildbin-libdir/crlmm/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'AffyGW.Rnw'
'CopyNumberOverview.Rnw'
'IlluminaPreprocessCN.Rnw'
'Infrastructure.Rnw'
'genotyping.Rnw'
'gtypeDownstream.Rnw'
** testing if installed package can be loaded
install for x64
* installing *source* package 'crlmm' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c gtypeCaller.c -o gtypeCaller.o
gtypeCaller.c: In function 'gtypeCallerPart1':
gtypeCaller.c:91:83: warning: variable 'ptr2ncIndexes' set but not used [-Wunused-but-set-variable]
gtypeCaller.c: In function 'gtypeCallerPart2':
gtypeCaller.c:315:89: warning: variable 'ptr2trim' set but not used [-Wunused-but-set-variable]
gtypeCaller.c:314:83: warning: variable 'ptr2ncIndexes' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124:15: warning: unused variable 'n_ignore' [-Wunused-variable]
utils.c: In function 'normalizeBAF':
utils.c:178:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
utils.c:180:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m64 -shared -s -static-libgcc -o crlmm.dll tmp.def gtypeCaller.o init.o trimmed.o utils.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/crlmm.buildbin-libdir/crlmm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'crlmm' as crlmm_1.16.9.zip
* DONE (crlmm)