clusterProfiler 1.5.0
Guangchuang Yu
| Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/clusterProfiler | | Last Changed Rev: 66789 / Revision: 66885 | | Last Changed Date: 2012-06-18 02:16:58 -0700 (Mon, 18 Jun 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | ERROR | skipped | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | ERROR | skipped | skipped |
| pitt | Mac OS X Leopard (10.5.8) / i386 | [ ERROR ] | skipped | skipped |
| perceval | Mac OS X Leopard (10.5.8) / i386 | ERROR | skipped | skipped |
* checking for file 'clusterProfiler/DESCRIPTION' ... OK
* preparing 'clusterProfiler':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: clusterProfiler
Loading required package: DBI
Loading Tcl/Tk interface ... done
Loading required package: AnnotationDbi
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following object(s) are masked from 'package:stats':
xtabs
The following object(s) are masked from 'package:base':
Filter, Find, Map, Position, Reduce,
anyDuplicated, cbind, colnames, duplicated, eval,
get, intersect, lapply, mapply, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rbind,
rep.int, rownames, sapply, setdiff, table,
tapply, union, unique
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view
with 'browseVignettes()'. To cite Bioconductor,
see 'citation("Biobase")', and for packages
'citation("pkgname")'.
KEGG.db contains mappings based on older data because
the original resource was removed from the the
public domain before the most recent update was
produced. This package should now be considered
deprecated and future versions of Bioconductor may
not have it available. One possible alternative to
consider is to look at the reactome.db package
Loading required package: org.Hs.eg.db
genes,gene_info
SELECT * FROM genes LEFT JOIN gene_info USING ( _id ) WHERE genes.gene_id in ( '23753','57222','5036','5037','10111','10856','6228','9361','1537','3376','6124','4175','2539' )
Loading required package: GO.db
genes,gene_info
SELECT * FROM genes LEFT JOIN gene_info USING ( _id ) WHERE genes.gene_id in ( '6629','10291','7094','3843','6611','10399','10576','4705','5216','6697','5868','80777','1973','1938','23450','9343','1917','9520' )
genes,gene_info
SELECT * FROM genes LEFT JOIN gene_info USING ( _id ) WHERE genes.gene_id in ( '4905','10383','10953','645958','7280','10381','5869','5985','23197','290','309','10577','23071','121504','2495','653226','84617' )
Warning in graph.data.frame(x, directed = F) :
In `d' `NA' elements were replaced with string "NA"
Warning in `[<-.factor`(`*tmp*`, thisvar, value = "NA") :
invalid factor level, NAs generated
Error: processing vignette 'clusterProfiler.Rnw' failed with diagnostics:
chunk 7 (label = plotgroupGO)
Error in graph.empty(n = 0, directed = directed) :
could not find function ".igraph.progress"
Execution halted