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Package 33/609HostnameOS / ArchBUILDCHECKBUILD BIN
annaffy 1.30.0
Colin A. Smith
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/annaffy
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: annaffy
Version: 1.30.0
Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings annaffy_1.30.0.tar.gz
StartedAt: 2013-03-24 23:10:41 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 23:13:03 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 141.5 seconds
RetCode: 0
Status:  OK 
CheckDir: annaffy.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/annaffy.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘annaffy/DESCRIPTION’ ... OK
* this is package ‘annaffy’ version ‘1.30.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘annaffy’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
           user system elapsed
is.annpkg 6.393   0.34   7.865
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

annaffy.Rcheck/00install.out:

* installing *source* package ‘annaffy’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘colnames<-’ from package ‘base’ in package ‘annaffy’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘annaffy.Rnw’ 
** testing if installed package can be loaded

* DONE (annaffy)

annaffy.Rcheck/annaffy-Ex.timings:

nameusersystemelapsed
aafChromLoc0.7040.0120.835
aafChromosome0.0800.0040.129
aafCytoband0.1160.0000.159
aafDescription0.0680.0120.160
aafGO0.8240.0200.963
aafGenBank0.0880.0000.170
aafLocusLink0.0920.0080.167
aafPathway1.0720.0201.130
aafProbe0.0640.0040.117
aafPubMed0.2520.0442.495
aafSearchText1.7520.0242.176
aafSymbol0.0720.0120.165
aafUniGene0.0840.0120.187
is.annpkg6.3930.3407.865