* checking for file ‘RamiGO/DESCRIPTION’ ... OK
* preparing ‘RamiGO’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .
Creating pdf output from LaTeX ...
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
\write18 enabled.
entering extended mode
(./Rd2.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, dumylang, nohyphenation, ge
rman-x-2009-06-19, ngerman-x-2009-06-19, afrikaans, ancientgreek, ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis
h, french, galician, german, ngerman, swissgerman, monogreek, greek, hungarian,
icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, marathi, or
iya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian, kurmanji,
lao, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk, pol
ish, portuguese, romanian, russian, sanskrit, serbian, serbianc, slovak, sloven
ian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, welsh, loaded
.
(/usr/share/texmf/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texmf/tex/latex/base/bk10.clo))
(/home/biocbuild/bbs-2.11-bioc/R/share/texmf/tex/latex/Rd.sty
(/usr/share/texmf/tex/latex/base/ifthen.sty)
(/usr/share/texmf/tex/latex/tools/longtable.sty)
(/usr/share/texmf/tex/latex/tools/bm.sty)
(/usr/share/texmf/tex/latex/base/alltt.sty)
(/usr/share/texmf/tex/latex/tools/verbatim.sty)
(/usr/share/texmf/tex/latex/url/url.sty) NOT loading ae
(/usr/share/texmf/tex/latex/base/fontenc.sty
(/usr/share/texmf/tex/latex/base/t1enc.def))
(/usr/share/texmf/tex/latex/psnfss/times.sty) NOT loading lmodern
(/home/biocbuild/texmf/tex/latex/inconsolata/inconsolata.sty
(/usr/share/texmf/tex/latex/base/textcomp.sty
(/usr/share/texmf/tex/latex/base/ts1enc.def))
(/usr/share/texmf/tex/latex/graphics/keyval.sty))
(/usr/share/texmf/tex/latex/graphics/color.sty
(/usr/share/texmf/tex/latex/latexconfig/color.cfg)
(/usr/share/texmf/tex/latex/pdftex-def/pdftex.def
(/usr/share/texmf/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texmf/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texmf/tex/latex/hyperref/hyperref.sty
(/usr/share/texmf/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texmf/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texmf/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texmf/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texmf/tex/latex/hyperref/pd1enc.def)
(/usr/share/texmf/tex/latex/latexconfig/hyperref.cfg))
Package hyperref Message: Driver (autodetected): hpdftex.
(/usr/share/texmf/tex/latex/hyperref/hpdftex.def
(/usr/share/texmf/tex/latex/oberdiek/rerunfilecheck.sty))
Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref) setting the option has no effect on input line 356.
Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref) setting the option has no effect on input line 356.
) (/usr/share/texmf/tex/latex/base/makeidx.sty)
(/usr/share/texmf/tex/latex/base/inputenc.sty
(/usr/share/texmf/tex/latex/base/utf8.def
(/usr/share/texmf/tex/latex/base/t1enc.dfu)
(/usr/share/texmf/tex/latex/base/ot1enc.dfu)
(/usr/share/texmf/tex/latex/base/omsenc.dfu)
(/usr/share/texmf/tex/latex/base/ts1enc.dfu))
(/usr/share/texmf/tex/latex/base/latin1.def))
Writing index file Rd2.idx
No file Rd2.aux.
(/usr/share/texmf/tex/latex/base/ts1cmr.fd)
(/usr/share/texmf/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texmf/tex/latex/hyperref/nameref.sty
(/usr/share/texmf/tex/generic/oberdiek/gettitlestring.sty))
LaTeX Font Warning: Font shape `T1/fi4/m/n' undefined
(Font) using `T1/cmr/m/n' instead on input line 20.
(/usr/share/texmf/tex/latex/psnfss/t1phv.fd)
(/usr/share/texmf/tex/latex/base/utf8.def) [1{/var/lib/texmf/fonts/map/pdftex/u
pdmap/pdftex.map}] (/usr/share/texmf/tex/latex/base/utf8.def) [2]
(/usr/share/texmf/tex/latex/base/utf8.def) [3]
(/usr/share/texmf/tex/latex/base/utf8.def) [4]
(/usr/share/texmf/tex/latex/base/utf8.def)
(/usr/share/texmf/tex/latex/base/utf8.def) [5]
(/usr/share/texmf/tex/latex/base/utf8.def)
Overfull \hbox (3.19798pt too wide) in paragraph at lines 427--428
[]\T1/ptm/m/n/10 Subramanian A, Tamayo P, Mootha VK, Mukher-jee S, Ebert BL, Gi
llette MA, Paulovich A, Pomeroy
[6] (/usr/share/texmf/tex/latex/base/utf8.def) [7]
(/usr/share/texmf/tex/latex/base/utf8.def)
Overfull \hbox (13.60664pt too wide) in paragraph at lines 548--549
[]\T1/ptm/m/n/10 The edge col-ors in the tree rep-re-sent the re-la-tion-ship b
e-tween two nodes. In par-tic-u-lar: green=positively
[8]
Overfull \hbox (79.60931pt too wide) in paragraph at lines 580--580
[]\T1/fi4/m/n/9 goIDs <- c("GO:0051130","GO:0050789","GO:0019912","GO:0016301"
,"GO:0003824","GO:0005783","GO:0043229")[]
(/usr/share/texmf/tex/latex/base/utf8.def)
(/usr/share/texmf/tex/latex/base/utf8.def) [9]
(/usr/share/texmf/tex/latex/base/utf8.def) [10]
No file Rd2.ind.
[11] (./Rd2.aux)
Package rerunfilecheck Warning: File `Rd2.out' has changed.
(rerunfilecheck) Rerun to get outlines right
(rerunfilecheck) or use package `bookmark'.
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
)
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.oldClass.Rdash.class} has been referenced but does not exist, replaced by
a fixed one
pdfTeX warning (dest): name{Rfn.igraph} has been referenced but does not exist,
replaced by a fixed one
{/usr/share/texmf/fonts/enc/dvips/cm-super/cm-super-t1.enc}{/usr/share/texmf/fo
nts/enc/dvips/base/8r.enc}</usr/share/texmf/fonts/type1/public/cm-super/sfrm090
0.pfb></usr/share/texmf/fonts/type1/public/cm-super/sfrm1000.pfb></usr/share/te
xmf/fonts/type1/urw/helvetic/uhvr8a.pfb></usr/share/texmf/fonts/type1/urw/times
/utmb8a.pfb></usr/share/texmf/fonts/type1/urw/times/utmr8a.pfb></usr/share/texm
f/fonts/type1/urw/times/utmr8a.pfb></usr/share/texmf/fonts/type1/urw/times/utmr
i8a.pfb>
Output written on Rd2.pdf (11 pages, 129788 bytes).
Transcript written on Rd2.log.
This is makeindex, version 2.15 [TeX Live 2011] (kpathsea + Thai support).
Scanning input file Rd2.idx....done (57 entries accepted, 0 rejected).
Sorting entries....done (338 comparisons).
Generating output file Rd2.ind....done (107 lines written, 0 warnings).
Output written in Rd2.ind.
Transcript written in Rd2.ilg.
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
\write18 enabled.
entering extended mode
(./Rd2.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, dumylang, nohyphenation, ge
rman-x-2009-06-19, ngerman-x-2009-06-19, afrikaans, ancientgreek, ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis
h, french, galician, german, ngerman, swissgerman, monogreek, greek, hungarian,
icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, marathi, or
iya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian, kurmanji,
lao, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk, pol
ish, portuguese, romanian, russian, sanskrit, serbian, serbianc, slovak, sloven
ian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, welsh, loaded
.
(/usr/share/texmf/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texmf/tex/latex/base/bk10.clo))
(/home/biocbuild/bbs-2.11-bioc/R/share/texmf/tex/latex/Rd.sty
(/usr/share/texmf/tex/latex/base/ifthen.sty)
(/usr/share/texmf/tex/latex/tools/longtable.sty)
(/usr/share/texmf/tex/latex/tools/bm.sty)
(/usr/share/texmf/tex/latex/base/alltt.sty)
(/usr/share/texmf/tex/latex/tools/verbatim.sty)
(/usr/share/texmf/tex/latex/url/url.sty) NOT loading ae
(/usr/share/texmf/tex/latex/base/fontenc.sty
(/usr/share/texmf/tex/latex/base/t1enc.def))
(/usr/share/texmf/tex/latex/psnfss/times.sty) NOT loading lmodern
(/home/biocbuild/texmf/tex/latex/inconsolata/inconsolata.sty
(/usr/share/texmf/tex/latex/base/textcomp.sty
(/usr/share/texmf/tex/latex/base/ts1enc.def))
(/usr/share/texmf/tex/latex/graphics/keyval.sty))
(/usr/share/texmf/tex/latex/graphics/color.sty
(/usr/share/texmf/tex/latex/latexconfig/color.cfg)
(/usr/share/texmf/tex/latex/pdftex-def/pdftex.def
(/usr/share/texmf/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texmf/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texmf/tex/latex/hyperref/hyperref.sty
(/usr/share/texmf/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texmf/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texmf/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texmf/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texmf/tex/latex/hyperref/pd1enc.def)
(/usr/share/texmf/tex/latex/latexconfig/hyperref.cfg))
Package hyperref Message: Driver (autodetected): hpdftex.
(/usr/share/texmf/tex/latex/hyperref/hpdftex.def
(/usr/share/texmf/tex/latex/oberdiek/rerunfilecheck.sty))
Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref) setting the option has no effect on input line 356.
Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref) setting the option has no effect on input line 356.
) (/usr/share/texmf/tex/latex/base/makeidx.sty)
(/usr/share/texmf/tex/latex/base/inputenc.sty
(/usr/share/texmf/tex/latex/base/utf8.def
(/usr/share/texmf/tex/latex/base/t1enc.dfu)
(/usr/share/texmf/tex/latex/base/ot1enc.dfu)
(/usr/share/texmf/tex/latex/base/omsenc.dfu)
(/usr/share/texmf/tex/latex/base/ts1enc.dfu))
(/usr/share/texmf/tex/latex/base/latin1.def))
Writing index file Rd2.idx
(./Rd2.aux) (/usr/share/texmf/tex/latex/base/ts1cmr.fd)
(/usr/share/texmf/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texmf/tex/latex/hyperref/nameref.sty
(/usr/share/texmf/tex/generic/oberdiek/gettitlestring.sty)) (./Rd2.out)
(./Rd2.out)
LaTeX Font Warning: Font shape `T1/fi4/m/n' undefined
(Font) using `T1/cmr/m/n' instead on input line 20.
(/usr/share/texmf/tex/latex/psnfss/t1phv.fd) (./Rd2.toc)
(/usr/share/texmf/tex/latex/base/utf8.def) [1{/var/lib/texmf/fonts/map/pdftex/u
pdmap/pdftex.map}] (/usr/share/texmf/tex/latex/base/utf8.def) [2] [3]
(/usr/share/texmf/tex/latex/base/utf8.def) [4]
(/usr/share/texmf/tex/latex/base/utf8.def)
(/usr/share/texmf/tex/latex/base/utf8.def) [5]
(/usr/share/texmf/tex/latex/base/utf8.def) [6]
(/usr/share/texmf/tex/latex/base/utf8.def)
Overfull \hbox (3.19798pt too wide) in paragraph at lines 427--428
[]\T1/ptm/m/n/10 Subramanian A, Tamayo P, Mootha VK, Mukher-jee S, Ebert BL, Gi
llette MA, Paulovich A, Pomeroy
[7] (/usr/share/texmf/tex/latex/base/utf8.def)
(/usr/share/texmf/tex/latex/base/utf8.def) [8]
Overfull \hbox (13.60664pt too wide) in paragraph at lines 548--549
[]\T1/ptm/m/n/10 The edge col-ors in the tree rep-re-sent the re-la-tion-ship b
e-tween two nodes. In par-tic-u-lar: green=positively
[9]
Overfull \hbox (79.60931pt too wide) in paragraph at lines 580--580
[]\T1/fi4/m/n/9 goIDs <- c("GO:0051130","GO:0050789","GO:0019912","GO:0016301"
,"GO:0003824","GO:0005783","GO:0043229")[]
(/usr/share/texmf/tex/latex/base/utf8.def)
(/usr/share/texmf/tex/latex/base/utf8.def) [10]
(/usr/share/texmf/tex/latex/base/utf8.def) [11] (./Rd2.ind [12]
LaTeX Font Warning: Font shape `T1/fi4/m/it' undefined
(Font) using `T1/fi4/m/n' instead on input line 26.
[13]) (./Rd2.aux)
Package rerunfilecheck Warning: File `Rd2.out' has changed.
(rerunfilecheck) Rerun to get outlines right
(rerunfilecheck) or use package `bookmark'.
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
)
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.oldClass.Rdash.class} has been referenced but does not exist, replaced by
a fixed one
pdfTeX warning (dest): name{Rfn.igraph} has been referenced but does not exist,
replaced by a fixed one
{/usr/share/texmf/fonts/enc/dvips/cm-super/cm-super-t1.enc}{/usr/share/texmf/fo
nts/enc/dvips/base/8r.enc}</usr/share/texmf/fonts/type1/public/amsfonts/cm/cmsy
10.pfb></usr/share/texmf/fonts/type1/public/cm-super/sfrm0900.pfb></usr/share/t
exmf/fonts/type1/public/cm-super/sfrm1000.pfb></usr/share/texmf/fonts/type1/urw
/helvetic/uhvr8a.pfb></usr/share/texmf/fonts/type1/urw/times/utmb8a.pfb></usr/s
hare/texmf/fonts/type1/urw/times/utmr8a.pfb></usr/share/texmf/fonts/type1/urw/t
imes/utmr8a.pfb></usr/share/texmf/fonts/type1/urw/times/utmri8a.pfb>
Output written on Rd2.pdf (13 pages, 143116 bytes).
Transcript written on Rd2.log.
This is makeindex, version 2.15 [TeX Live 2011] (kpathsea + Thai support).
Scanning input file Rd2.idx....done (57 entries accepted, 0 rejected).
Sorting entries....done (338 comparisons).
Generating output file Rd2.ind....done (107 lines written, 0 warnings).
Output written in Rd2.ind.
Transcript written in Rd2.ilg.
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011)
\write18 enabled.
entering extended mode
(./Rd2.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, dumylang, nohyphenation, ge
rman-x-2009-06-19, ngerman-x-2009-06-19, afrikaans, ancientgreek, ibycus, arabi
c, armenian, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danis
h, dutch, ukenglish, usenglishmax, esperanto, estonian, ethiopic, farsi, finnis
h, french, galician, german, ngerman, swissgerman, monogreek, greek, hungarian,
icelandic, assamese, bengali, gujarati, hindi, kannada, malayalam, marathi, or
iya, panjabi, tamil, telugu, indonesian, interlingua, irish, italian, kurmanji,
lao, latin, latvian, lithuanian, mongolian, mongolianlmc, bokmal, nynorsk, pol
ish, portuguese, romanian, russian, sanskrit, serbian, serbianc, slovak, sloven
ian, spanish, swedish, turkish, turkmen, ukrainian, uppersorbian, welsh, loaded
.
(/usr/share/texmf/tex/latex/base/book.cls
Document Class: book 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texmf/tex/latex/base/bk10.clo))
(/home/biocbuild/bbs-2.11-bioc/R/share/texmf/tex/latex/Rd.sty
(/usr/share/texmf/tex/latex/base/ifthen.sty)
(/usr/share/texmf/tex/latex/tools/longtable.sty)
(/usr/share/texmf/tex/latex/tools/bm.sty)
(/usr/share/texmf/tex/latex/base/alltt.sty)
(/usr/share/texmf/tex/latex/tools/verbatim.sty)
(/usr/share/texmf/tex/latex/url/url.sty) NOT loading ae
(/usr/share/texmf/tex/latex/base/fontenc.sty
(/usr/share/texmf/tex/latex/base/t1enc.def))
(/usr/share/texmf/tex/latex/psnfss/times.sty) NOT loading lmodern
(/home/biocbuild/texmf/tex/latex/inconsolata/inconsolata.sty
(/usr/share/texmf/tex/latex/base/textcomp.sty
(/usr/share/texmf/tex/latex/base/ts1enc.def))
(/usr/share/texmf/tex/latex/graphics/keyval.sty))
(/usr/share/texmf/tex/latex/graphics/color.sty
(/usr/share/texmf/tex/latex/latexconfig/color.cfg)
(/usr/share/texmf/tex/latex/pdftex-def/pdftex.def
(/usr/share/texmf/tex/generic/oberdiek/infwarerr.sty)
(/usr/share/texmf/tex/generic/oberdiek/ltxcmds.sty)))
(/usr/share/texmf/tex/latex/hyperref/hyperref.sty
(/usr/share/texmf/tex/generic/oberdiek/hobsub-hyperref.sty
(/usr/share/texmf/tex/generic/oberdiek/hobsub-generic.sty))
(/usr/share/texmf/tex/generic/ifxetex/ifxetex.sty)
(/usr/share/texmf/tex/latex/oberdiek/kvoptions.sty)
(/usr/share/texmf/tex/latex/hyperref/pd1enc.def)
(/usr/share/texmf/tex/latex/latexconfig/hyperref.cfg))
Package hyperref Message: Driver (autodetected): hpdftex.
(/usr/share/texmf/tex/latex/hyperref/hpdftex.def
(/usr/share/texmf/tex/latex/oberdiek/rerunfilecheck.sty))
Package hyperref Warning: Option `hyperindex' has already been used,
(hyperref) setting the option has no effect on input line 356.
Package hyperref Warning: Option `pagebackref' has already been used,
(hyperref) setting the option has no effect on input line 356.
) (/usr/share/texmf/tex/latex/base/makeidx.sty)
(/usr/share/texmf/tex/latex/base/inputenc.sty
(/usr/share/texmf/tex/latex/base/utf8.def
(/usr/share/texmf/tex/latex/base/t1enc.dfu)
(/usr/share/texmf/tex/latex/base/ot1enc.dfu)
(/usr/share/texmf/tex/latex/base/omsenc.dfu)
(/usr/share/texmf/tex/latex/base/ts1enc.dfu))
(/usr/share/texmf/tex/latex/base/latin1.def))
Writing index file Rd2.idx
(./Rd2.aux) (/usr/share/texmf/tex/latex/base/ts1cmr.fd)
(/usr/share/texmf/tex/latex/psnfss/t1ptm.fd)
(/usr/share/texmf/tex/latex/hyperref/nameref.sty
(/usr/share/texmf/tex/generic/oberdiek/gettitlestring.sty)) (./Rd2.out)
(./Rd2.out)
LaTeX Font Warning: Font shape `T1/fi4/m/n' undefined
(Font) using `T1/cmr/m/n' instead on input line 20.
(/usr/share/texmf/tex/latex/psnfss/t1phv.fd) (./Rd2.toc)
(/usr/share/texmf/tex/latex/base/utf8.def) [1{/var/lib/texmf/fonts/map/pdftex/u
pdmap/pdftex.map}] (/usr/share/texmf/tex/latex/base/utf8.def) [2] [3]
(/usr/share/texmf/tex/latex/base/utf8.def) [4]
(/usr/share/texmf/tex/latex/base/utf8.def)
(/usr/share/texmf/tex/latex/base/utf8.def) [5]
(/usr/share/texmf/tex/latex/base/utf8.def) [6]
(/usr/share/texmf/tex/latex/base/utf8.def)
Overfull \hbox (3.19798pt too wide) in paragraph at lines 427--428
[]\T1/ptm/m/n/10 Subramanian A, Tamayo P, Mootha VK, Mukher-jee S, Ebert BL, Gi
llette MA, Paulovich A, Pomeroy
[7] (/usr/share/texmf/tex/latex/base/utf8.def)
(/usr/share/texmf/tex/latex/base/utf8.def) [8]
Overfull \hbox (13.60664pt too wide) in paragraph at lines 548--549
[]\T1/ptm/m/n/10 The edge col-ors in the tree rep-re-sent the re-la-tion-ship b
e-tween two nodes. In par-tic-u-lar: green=positively
[9]
Overfull \hbox (79.60931pt too wide) in paragraph at lines 580--580
[]\T1/fi4/m/n/9 goIDs <- c("GO:0051130","GO:0050789","GO:0019912","GO:0016301"
,"GO:0003824","GO:0005783","GO:0043229")[]
(/usr/share/texmf/tex/latex/base/utf8.def)
(/usr/share/texmf/tex/latex/base/utf8.def) [10]
(/usr/share/texmf/tex/latex/base/utf8.def) [11] (./Rd2.ind [12]
LaTeX Font Warning: Font shape `T1/fi4/m/it' undefined
(Font) using `T1/fi4/m/n' instead on input line 26.
[13]) (./Rd2.aux)
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
)
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.oldClass.Rdash.class} has been referenced but does not exist, replaced by
a fixed one
pdfTeX warning (dest): name{Rfn.igraph} has been referenced but does not exist,
replaced by a fixed one
{/usr/share/texmf/fonts/enc/dvips/cm-super/cm-super-t1.enc}{/usr/share/texmf/fo
nts/enc/dvips/base/8r.enc}</usr/share/texmf/fonts/type1/public/amsfonts/cm/cmsy
10.pfb></usr/share/texmf/fonts/type1/public/cm-super/sfrm0900.pfb></usr/share/t
exmf/fonts/type1/public/cm-super/sfrm1000.pfb></usr/share/texmf/fonts/type1/urw
/helvetic/uhvr8a.pfb></usr/share/texmf/fonts/type1/urw/times/utmb8a.pfb></usr/s
hare/texmf/fonts/type1/urw/times/utmr8a.pfb></usr/share/texmf/fonts/type1/urw/t
imes/utmr8a.pfb></usr/share/texmf/fonts/type1/urw/times/utmri8a.pfb>
Output written on Rd2.pdf (13 pages, 143325 bytes).
Transcript written on Rd2.log.
Saving output to ‘/tmp/RtmpqcIalq/Rbuild73adf7b09ae/RamiGO/build/RamiGO.pdf’ ...
Done
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘RamiGO_1.4.0.tar.gz’