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Package 445/565HostnameOS / ArchBUILDCHECKBUILD BIN
RBGL 1.33.7
Bioconductor Package Maintainer
Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RBGL
Last Changed Rev: 66820 / Revision: 66885
Last Changed Date: 2012-06-19 02:43:09 -0700 (Tue, 19 Jun 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: RBGL
Version: 1.33.7
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RBGL_1.33.7.tar.gz
StartedAt: 2012-06-21 02:59:00 -0700 (Thu, 21 Jun 2012)
EndedAt: 2012-06-21 03:03:02 -0700 (Thu, 21 Jun 2012)
EllapsedTime: 242.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: RBGL.Rcheck
Warnings: 1

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/RBGL.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RBGL/DESCRIPTION' ... OK
* this is package 'RBGL' version '1.33.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'RBGL' can be installed ... WARNING
Found the following significant warnings:
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
  rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
See '/Users/biocbuild/bbs-2.11-bioc/meat/RBGL.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/RBGL.Rcheck/00check.log'
for details.

RBGL.Rcheck/00install.out:

* installing *source* package 'RBGL' ...
untarring boost include tree...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c bbc.cpp -o bbc.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from bbc.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from bbc.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c cliques.cpp -o cliques.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from cliques.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from cliques.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c clusteringCoef.cpp -o clusteringCoef.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from clusteringCoef.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from clusteringCoef.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c dominatorTree.cpp -o dominatorTree.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from dominatorTree.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from dominatorTree.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from edmonds_optimum_branching.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from edmonds_optimum_branching.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c hcs.cpp -o hcs.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from hcs.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from hcs.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list<boost::undirectedS, double>, OutputIterator = std::back_insert_iterator<std::vector<long unsigned int, std::allocator<long unsigned int> > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c incrConnComp.cpp -o incrConnComp.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from incrConnComp.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from incrConnComp.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
incrConnComp.cpp: In function 'SEXPREC* BGL_incr_comp_internal(SEXPREC*, SEXPREC*, SEXPREC*, E_IC_METHOD)':
incrConnComp.cpp:74: warning: unused variable 'child_index'
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c interfaces.cpp -o interfaces.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from interfaces.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from interfaces.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c minST.cpp -o minST.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c mincut.cpp -o mincut.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp: In member function 'void boost::detail::push_relabel<Graph, EdgeCapacityMap, ResidualCapacityEdgeMap, ReverseEdgeMap, VertexIndexMap, FlowValue>::discharge(typename boost::graph_traits<Graph>::vertex_descriptor) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::directedS, boost::no_property, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::no_property, boost::listS>, EdgeCapacityMap = boost::adj_list_edge_property_map<boost::directed_tag, double, const double&, long unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::edge_capacity_t>, ResidualCapacityEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::edge_residual_capacity_t>, ReverseEdgeMap = boost::adj_list_edge_property_map<boost::directed_tag, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, const boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>&, long unsigned int, const boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >, boost::edge_reverse_t>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::no_property, long unsigned int>, FlowValue = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp:347: warning: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >*, std::vector<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >, std::allocator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, int>::m_src' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp:347: note: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >*, std::vector<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > >, std::allocator<boost::detail::sep_<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, int>::m_src' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, E_MF_METHOD)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits<G>::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator<std::vector<long unsigned int, std::allocator<long unsigned int> > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, long unsigned int, boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, long unsigned int, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c ordering.cpp -o ordering.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from ordering.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from ordering.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: "BGL_FORALL_VERTICES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: "BGL_FORALL_EDGES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: "BGL_FORALL_ADJ_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c planar.cpp -o planar.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from planar.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from planar.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: "BGL_FORALL_VERTICES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: "BGL_FORALL_EDGES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: "BGL_FORALL_ADJ_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: this is the location of the previous definition
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:161: warning: comparison between signed and unsigned integer expressions
planar.cpp:165: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:256: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:369: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:461: warning: unused variable 'i'
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder<Graph, MateMap, VertexIndexMap>::augment_matching() [with Graph = R_adjacency_list<boost::undirectedS, int>, MateMap = long unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:231: warning: 'w' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:231: warning: 'v' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp: In member function 'void boost::boyer_myrvold_impl<Graph, VertexIndexMap, StoreOldHandlesPolicy, StoreEmbeddingPolicy>::extract_kuratowski_subgraph(OutputIterator, EdgeIndexMap) [with OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > >, EdgeIndexMap = boost::adj_list_edge_property_map<boost::undirected_tag, int, int&, long unsigned int, boost::property<boost::edge_index_t, int, boost::no_property>, boost::edge_index_t>, Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, StoreOldHandlesPolicy = boost::graph::detail::store_old_handles, StoreEmbeddingPolicy = boost::graph::detail::no_embedding]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1279: warning: 'previous_vertex' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1238: warning: 'bicomp_root' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1237: warning: 'z' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/chrobak_payne_drawing.hpp: In function 'void boost::chrobak_payne_straight_line_drawing(const Graph&, PlanarEmbedding, ForwardIterator, ForwardIterator, GridPositionMap, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >&>, ForwardIterator = __gnu_cxx::__normal_iterator<long unsigned int*, std::vector<long unsigned int, std::allocator<long unsigned int> > >, GridPositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator<coord_t*, std::vector<coord_t, std::allocator<coord_t> > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, coord_t, coord_t&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/chrobak_payne_drawing.hpp:219: warning: 'next_to_rightmost' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int, boost::no_property>, boost::property<boost::edge_index_t, int, boost::no_property>, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >*, std::vector<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::allocator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > > > > >, boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >, std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int>, std::allocator<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >&>, OutputIterator = std::back_insert_iterator<std::vector<long unsigned int, std::allocator<long unsigned int> > >, VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int, boost::no_property>, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp:68: warning: 'second_vertex' may be used uninitialized in this function
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c shortestPath.cpp -o shortestPath.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:119: note: 'dvis' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c sna.cpp -o sna.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::undirectedS, double>, DistanceMatrix = Basic2DMatrix<double>, VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type, boost::no_property>, long unsigned int>, Weight = boost::adj_list_edge_property_map<boost::undirected_tag, double, double&, long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>, BinaryPredicate = std::less<double>, BinaryFunction = boost::closed_plus<double>, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:119: note: 'dvis' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> > >::<anonymous>.boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property> >::<anonymous>.boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, boost::no_property>::m_value.boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>::<anonymous>.boost::detail::edge_base<boost::directed_tag, long unsigned int>::m_source' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c transitive_closure.cpp -o transitive_closure.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/depth_first_search.hpp:18,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:17,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/depth_first_search.hpp:18,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:17,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c wavefront.cpp -o wavefront.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from wavefront.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from wavefront.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/RBGL.Rcheck/RBGL/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'RBGL.Rnw' 
** testing if installed package can be loaded

* DONE (RBGL)

RBGL.Rcheck/RBGL-Ex.timings:

nameusersystemelapsed
FileDep1.1660.0561.297
astarSearch0.0100.0010.012
bandwidth0.0290.0020.031
bccluster0.0200.0030.023
bellman.ford.sp0.0180.0020.020
betweenness0.0160.0020.018
bfs0.0300.0030.033
biConnComp0.0140.0020.016
chrobakPayneStraightLineDrawing0.0190.0010.020
clusteringCoef0.0210.0010.022
clusteringCoefAppr0.0150.0010.017
coloring0.0130.0020.016
connectedComp0.0300.0020.064
dag.sp0.0160.0020.018
dijkstra.sp0.0420.0040.045
dominatorTree0.0110.0010.013
edgeConn0.0110.0010.013
edmondsMaxCardinalityMatching0.0260.0010.026
edmondsOptimumBranching0.0160.0010.016
extractPath0.0060.0010.006
floyd.warshall.all.pairs.sp0.0150.0010.017
gprofile0.0110.0010.012
graphGenerator0.0010.0000.001
highlyConnSG0.0170.0010.019
incrConnComp0.0140.0020.016
is.triangulated0.0250.0030.027
isKuratowskiSubgraph0.0180.0010.019
isStraightLineDrawing0.0210.0010.021
isomorphism0.0210.0020.023
johnson.all.pairs.sp0.0160.0010.017
kCliques0.0130.0020.015
kCores0.0760.0040.080
lambdaSets0.0170.0020.019
layout0.0010.0000.000
makeBiconnectedPlanar0.0260.0010.027
makeConnected0.0180.0010.023
makeMaximalPlanar0.0280.0020.041
maxClique0.0260.0030.032
maxFlow0.0280.0010.030
minCut0.0150.0020.022
mstree.kruskal0.0480.0040.060
mstree.prim0.0130.0010.014
ordering0.0250.0010.026
planarCanonicalOrdering0.0150.0000.015
planarFaceTraversal0.0160.0010.017
removeSelfLoops0.0240.0020.026
separates0.0230.0020.025
sp.between0.0540.0030.066
strongComp0.0280.0020.031
transClosure0.0180.0010.020
transitivity0.0120.0020.014
tsort0.0380.0020.091
wavefront0.0130.0010.015