Package: LMGene

Version: 2.13.0

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch LMGene_2.13.0.tar.gz

StartedAt: 2012-06-21 01:16:31 -0700 (Thu, 21 Jun 2012)

EndedAt: 2012-06-21 01:20:06 -0700 (Thu, 21 Jun 2012)

EllapsedTime: 215.3 seconds

RetCode: 0

Status:  OK

CheckDir: LMGene.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/LMGene.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'LMGene/DESCRIPTION' ... OK
* this is package 'LMGene' version '2.13.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'LMGene' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'LMGene' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'LMGene.Rnw' 
** testing if installed package can be loaded

* DONE (LMGene)

name	user	system	elapsed
LMGene	3.573	0.790	4.446
genediff	3.245	0.799	4.114
glog	0.007	0.003	0.010
lnorm	0.187	0.010	0.199
lnormeS	0.111	0.008	0.123
neweS	0.081	0.005	0.088
norm	0.087	0.007	0.097
plotMeanSD	0.157	0.009	0.167
psmeans	0.182	0.009	0.191
rowaov	3.199	0.801	4.082
sample.eS	0.086	0.004	0.093
sample.ind	0.185	0.009	0.198
sample.mat	0.086	0.005	0.090
tranest	14.656	4.425	19.803
tranestAffyProbeLevel	85.016	23.926	115.720
transeS	0.009	0.003	0.011
vlist	0.003	0.001	0.005