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Package 239/609HostnameOS / ArchBUILDCHECKBUILD BIN
GeneSelectMMD 2.2.0
Weiliang Qiu
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/GeneSelectMMD
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: GeneSelectMMD
Version: 2.2.0
Command: rm -rf GeneSelectMMD.buildbin-libdir && mkdir GeneSelectMMD.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneSelectMMD_2.2.0.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R GeneSelectMMD.buildbin-libdir
StartedAt: 2013-03-25 01:53:34 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:53:46 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 12.6 seconds
RetCode: 0
Status:  OK 
PackageFile: GeneSelectMMD_2.2.0.tgz
PackageFileSize: 470.6 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneSelectMMD.buildbin-libdir GeneSelectMMD_2.2.0.tar.gz'
>>>>>>> 

* installing *source* package 'GeneSelectMMD' ...
** libs
*** arch - i386
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c Qfunc.f -o Qfunc.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c blas.f -o blas.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c isnan.c -o isnan.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c lbfgsb.f -o lbfgsb.o
lbfgsb.f: In function 'cauchy':
lbfgsb.f:1409: warning: 'tu' may be used uninitialized in this function
lbfgsb.f:1409: warning: 'tl' may be used uninitialized in this function
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c linpack.f -o linpack.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c myTtest.f -o myTtest.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c paraEstLoop.f -o paraEstLoop.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c pt.c -o pt.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c timer.f -o timer.o
gfortran -arch i386   -fPIC  -g -O2 -Wall -pedantic  -c wiFun.f -o wiFun.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneSelectMMD.so Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'gsMMD.Rnw' 
** testing if installed package can be loaded

* DONE (GeneSelectMMD)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386/GeneSelectMMD.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/i386/GeneSelectMMD.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=GeneSelectMMD.buildbin-libdir --libs-only GeneSelectMMD_2.2.0.tar.gz'
>>>>>>> 

* installing *source* package 'GeneSelectMMD' ...
** libs
*** arch - x86_64
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c Qfunc.f -o Qfunc.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c blas.f -o blas.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c isnan.c -o isnan.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c lbfgsb.f -o lbfgsb.o
lbfgsb.f: In function 'cauchy':
lbfgsb.f:1409: warning: 'tl' may be used uninitialized in this function
lbfgsb.f:1409: warning: 'tu' may be used uninitialized in this function
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c lbfgsbDriver.f -o lbfgsbDriver.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c linpack.f -o linpack.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c myTtest.f -o myTtest.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c paraEstLoop.f -o paraEstLoop.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c pt.c -o pt.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c timer.f -o timer.o
gfortran -arch x86_64   -fPIC  -g -O2 -Wall -pedantic  -c wiFun.f -o wiFun.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneSelectMMD.so Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64

* DONE (GeneSelectMMD)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64/GeneSelectMMD.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64/GeneSelectMMD.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "GeneSelectMMD.buildbin-libdir/GeneSelectMMD/libs/x86_64/GeneSelectMMD.so"