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Package 259/609HostnameOS / ArchBUILDCHECKBUILD BIN
GLAD 2.20.0
Philippe Hupe
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/GLAD
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GLAD
Version: 2.20.0
Command: rm -rf GLAD.buildbin-libdir && mkdir GLAD.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GLAD.buildbin-libdir GLAD_2.20.0.tar.gz
StartedAt: 2013-03-25 03:59:20 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 04:00:05 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 45.5 seconds
RetCode: 0
Status:  OK  
PackageFile: GLAD_2.20.0.zip
PackageFileSize: 1.247 MiB

Command output


install for i386

* installing *source* package 'GLAD' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BkpInfo.cpp -o BkpInfo.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c HaarSeg.cpp -o HaarSeg.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c MoveBkp.cpp -o MoveBkp.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c OutliersGNL.cpp -o OutliersGNL.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c chrBreakpoints.cpp -o chrBreakpoints.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c cutree.cpp -o cutree.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c daglad.cpp -o daglad.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c distance.cpp -o distance.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c filterBkp.cpp -o filterBkp.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c findCluster.cpp -o findCluster.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c glad-utils.cpp -o glad-utils.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c hclust.cpp -o hclust.o
gcc -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c laws.c -o laws.o
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c loopRemove.cpp -o loopRemove.o
g++ -m32 -shared -s -static-libgcc -o GLAD.dll tmp.def BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -LC:/GSL/i386/lib -lgsl -lgslcblas -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/GLAD.buildbin-libdir/GLAD/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'GLAD.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'GLAD' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BkpInfo.cpp -o BkpInfo.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c HaarSeg.cpp -o HaarSeg.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c MoveBkp.cpp -o MoveBkp.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c OutliersGNL.cpp -o OutliersGNL.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c chrBreakpoints.cpp -o chrBreakpoints.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c cutree.cpp -o cutree.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c daglad.cpp -o daglad.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c distance.cpp -o distance.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c filterBkp.cpp -o filterBkp.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c findCluster.cpp -o findCluster.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c glad-utils.cpp -o glad-utils.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c hclust.cpp -o hclust.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c laws.c -o laws.o
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c loopRemove.cpp -o loopRemove.o
g++ -m64 -shared -s -static-libgcc -o GLAD.dll tmp.def BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -LC:/GSL/x64/lib -lgsl -lgslcblas -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/GLAD.buildbin-libdir/GLAD/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GLAD' as GLAD_2.20.0.zip

* DONE (GLAD)