Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 86/609HostnameOS / ArchBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.22.0
B. M. Bolstad
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/BufferedMatrixMethods
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: BufferedMatrixMethods
Version: 1.22.0
Command: rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrixMethods_1.22.0.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R BufferedMatrixMethods.buildbin-libdir
StartedAt: 2013-03-25 01:48:11 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 01:48:16 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 5.2 seconds
RetCode: 0
Status:  OK 
PackageFile: BufferedMatrixMethods_1.22.0.tgz
PackageFileSize: 42.66 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package 'BufferedMatrixMethods' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.15/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic  -c init_package.c -o init_package.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.15/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic  -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344: warning: unused variable 'i'
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151: warning: unused variable 'current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: 'min' defined but not used
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (BufferedMatrixMethods)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386/BufferedMatrixMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386/BufferedMatrixMethods.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=BufferedMatrixMethods.buildbin-libdir --libs-only BufferedMatrixMethods_1.22.0.tar.gz'
>>>>>>> 

* installing *source* package 'BufferedMatrixMethods' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.15/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic  -c init_package.c -o init_package.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.15/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic  -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344: warning: unused variable 'i'
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593: warning: unused variable 'current_mode'
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151: warning: unused variable 'current_mode'
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: 'min' defined but not used
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64

* DONE (BufferedMatrixMethods)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64/BufferedMatrixMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64/BufferedMatrixMethods.so"