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Package 71/564HostnameOS / ArchBUILDCHECKBUILD BIN
BioNet 1.15.2
Marcus Dittrich
Snapshot Date: 2012-06-14 15:22:08 -0700 (Thu, 14 Jun 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioNet
Last Changed Rev: 65489 / Revision: 66742
Last Changed Date: 2012-04-27 10:54:49 -0700 (Fri, 27 Apr 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  ERROR  skipped  skipped 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: BioNet
Version: 1.15.2
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BioNet_1.15.2.tar.gz
StartedAt: 2012-06-14 22:15:25 -0700 (Thu, 14 Jun 2012)
EndedAt: 2012-06-14 22:20:44 -0700 (Thu, 14 Jun 2012)
EllapsedTime: 319.1 seconds
RetCode: 0
Status:  OK 
CheckDir: BioNet.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/BioNet.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'BioNet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BioNet' version '1.15.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'BioNet' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.4Mb
  sub-directories of 1Mb or more:
    doc       1.4Mb
    extdata   3.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/BioNet.Rcheck/00check.log'
for details.

BioNet.Rcheck/00install.out:

* installing *source* package 'BioNet' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'Tutorial.Rnw' 
** testing if installed package can be loaded

* DONE (BioNet)

BioNet.Rcheck/BioNet-Ex.timings:

nameusersystemelapsed
aggrPvals0.9130.0770.998
bumOptim1.2120.3411.567
compareNetworks2.4130.1302.623
consensusScores0.5610.0070.571
fbum0.0000.0000.001
fbumLL1.3310.3591.707
fdrThreshold1.3640.3491.727
fitBumModel1.6900.3752.082
getCompScores3.5670.2213.814
getEdgeList1.7440.0491.799
hist.bum1.4320.3871.844
largestComp12.708 2.51415.381
largestScoreComp15.252 2.70718.200
loadNetwork.sif0.0010.0000.000
makeNetwork0.0170.0010.018
mapByVar0.0000.0000.001
permutateNodes17.867 2.80020.826
piUpper1.2280.3741.617
plot.bum1.9860.3902.395
plot3dModule5.4670.9546.520
plotLLSurface1.7810.2312.024
plotModule4.6510.9375.757
print.bum1.3200.3631.694
pvaluesExample0.0140.0020.015
readHeinzGraph0.5520.0070.562
readHeinzTree0.5650.0080.577
resamplingPvalues7.6490.2838.130
rmSelfLoops0.0100.0000.011
runFastHeinz12.958 1.59415.083
save3dModule3.7440.8484.673
saveNetwork2.0930.0992.211
scanFDR1.0700.3921.528
scoreFunction1.1140.4781.650
scoreNodes4.5221.0505.836
scoreOffset1.1020.4001.628
sortedEdgeList5.8530.0686.347
subNetwork0.0550.0030.058
summary.bum1.2250.3921.633
writeHeinz3.6420.8504.548
writeHeinzEdges7.3901.1058.658
writeHeinzNodes4.4100.8255.304