Back to the "Multiple platform build/check report"[A] B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 10/565HostnameOS / ArchBUILDCHECKBUILD BIN
ADaCGH2 1.7.0
Ramon Diaz-Uriarte
Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ADaCGH2
Last Changed Rev: 64680 / Revision: 66885
Last Changed Date: 2012-03-30 15:15:56 -0700 (Fri, 30 Mar 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ADaCGH2
Version: 1.7.0
Command: rm -rf ADaCGH2.buildbin-libdir && mkdir ADaCGH2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ADaCGH2_1.7.0.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R ADaCGH2.buildbin-libdir
StartedAt: 2012-06-21 04:29:12 -0700 (Thu, 21 Jun 2012)
EndedAt: 2012-06-21 04:29:43 -0700 (Thu, 21 Jun 2012)
EllapsedTime: 31.2 seconds
RetCode: 0
Status:  OK 
PackageFile: ADaCGH2_1.7.0.tgz
PackageFileSize: 468.9 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ADaCGH2.buildbin-libdir ADaCGH2_1.7.0.tar.gz'
>>>>>>> 

* installing *source* package 'ADaCGH2' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:65: warning: unused variable 'totalNorm'
r_haarseg.c:152:8: warning: "/*" within comment
r_haarseg.c:176:8: warning: "/*" within comment
r_haarseg.c: In function 'ad_FindLocalPeaks':
r_haarseg.c:128: warning: unused variable 'j'
r_haarseg.c: In function 'ad_HaarConv':
r_haarseg.c:59: warning: 'lowWeightSum' may be used uninitialized in this function
r_haarseg.c:64: warning: 'highNonNormed' may be used uninitialized in this function
r_haarseg.c:63: warning: 'lowNonNormed' may be used uninitialized in this function
r_haarseg.c:60: warning: 'highWeightSum' may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ADaCGH2.so r_haarseg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Setting adacgh_changepoints to DNAcopy:::changepoints
Setting adacgh_trimmed.variance to DNAcopy:::trimmed.variance
** help
*** installing help indices
** building package indices
** installing vignettes
   'ADaCGH2.Rnw' using 'latin1' 
** testing if installed package can be loaded

* DONE (ADaCGH2)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386/ADaCGH2.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/i386/ADaCGH2.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=ADaCGH2.buildbin-libdir --libs-only ADaCGH2_1.7.0.tar.gz'
>>>>>>> 

* installing *source* package 'ADaCGH2' ...
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/ppc -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c r_haarseg.c -o r_haarseg.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ADaCGH2.so r_haarseg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/ADaCGH2.buildbin-libdir/ADaCGH2/libs/ppc

* DONE (ADaCGH2)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ADaCGH2.buildbin-libdir/ADaCGH2/libs/ppc/ADaCGH2.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/ppc/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/ppc/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/ppc/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/ppc/ADaCGH2.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=ADaCGH2.buildbin-libdir --libs-only ADaCGH2_1.7.0.tar.gz'
>>>>>>> 

* installing *source* package 'ADaCGH2' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2  -c r_haarseg.c -o r_haarseg.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ADaCGH2.so r_haarseg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64

* DONE (ADaCGH2)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64/ADaCGH2.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64/ADaCGH2.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "ADaCGH2.buildbin-libdir/ADaCGH2/libs/x86_64/ADaCGH2.so"