imageHTS 1.6.0
Gregoire Pau
| Snapshot Date: 2012-09-23 17:01:39 -0700 (Sun, 23 Sep 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/imageHTS | | Last Changed Rev: 64678 / Revision: 69725 | | Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012) |
| lamb2 | Linux (openSUSE 11.4) / x86_64 | OK | [ OK ] | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Leopard (10.5.8) / i386 | N O T S U P P O R T E D |
* using log directory ‘/loc/home/biocbuild/bbs-2.10-bioc/meat/imageHTS.Rcheck’
* using R version 2.15.1 (2012-06-22)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘imageHTS/DESCRIPTION’ ... OK
* this is package ‘imageHTS’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘imageHTS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
buildCellHTS : <anonymous>: warning in matrix(xtemp[, , ch, drop =
FALSE], nc = nbReplicates, dimnames = list(Features = 1:nbFeatures,
Sample = 1:nbReplicates)): partial argument match of 'nc' to 'ncol'
parseDCF: warning in matrix("", nr = length(tt), nc = 2): partial
argument match of 'nr' to 'nrow'
parseDCF: warning in matrix("", nr = length(tt), nc = 2): partial
argument match of 'nc' to 'ncol'
segmentATH: warning in rgbImage(r = a, g = t, b = h): partial argument
match of 'r' to 'red'
segmentATH: warning in rgbImage(r = a, g = t, b = h): partial argument
match of 'g' to 'green'
segmentATH: warning in rgbImage(r = a, g = t, b = h): partial argument
match of 'b' to 'blue'
segmentWells: warning in writeImage(frame, file = ff, quality = 95):
partial argument match of 'file' to 'files'
zprime: warning in matrix(a, nc = 1): partial argument match of 'nc' to
'ncol'
zprime: warning in matrix(b, nc = 1): partial argument match of 'nc' to
'ncol'
test.popCellPicker: no visible binding for global variable ‘x’
test.popCellPicker: no visible binding for global variable ‘access’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
‘library’ or ‘require’ call not declared from: ‘MASS’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/loc/home/biocbuild/bbs-2.10-bioc/meat/imageHTS.Rcheck/00check.log’
for details.
* installing *source* package ‘imageHTS’ ...
** R
** inst
** preparing package for lazy loading
Xlib: extension "RANDR" missing on display ":12258.0".
** help
*** installing help indices
** building package indices
** installing vignettes
‘imageHTS-introduction.Rnw’
** testing if installed package can be loaded
Xlib: extension "RANDR" missing on display ":12258.0".
* DONE (imageHTS)