Package: RBGL

Version: 1.32.1

Command: rm -rf RBGL.buildbin-libdir && mkdir RBGL.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh RBGL_1.32.1.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R RBGL.buildbin-libdir

StartedAt: 2012-09-24 02:25:11 -0700 (Mon, 24 Sep 2012)

EndedAt: 2012-09-24 02:30:45 -0700 (Mon, 24 Sep 2012)

EllapsedTime: 333.4 seconds

RetCode: 0

Status:  OK

PackageFile: RBGL_1.32.1.tgz

PackageFileSize: 1.321 MiB

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=RBGL.buildbin-libdir RBGL_1.32.1.tar.gz'
>>>>>>> 

* installing *source* package 'RBGL' ...
removing exploded boost header source...
found  rbgl_trimmed_boost_1_49_0  header sources and tar archive;
 using what is there.
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c bbc.cpp -o bbc.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from bbc.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from bbc.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c cliques.cpp -o cliques.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from cliques.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from cliques.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c clusteringCoef.cpp -o clusteringCoef.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from clusteringCoef.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from clusteringCoef.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c dominatorTree.cpp -o dominatorTree.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from dominatorTree.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from dominatorTree.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from edmonds_optimum_branching.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from edmonds_optimum_branching.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c hcs.cpp -o hcs.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from hcs.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from hcs.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list, OutputIterator = std::back_insert_iterator > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c incrConnComp.cpp -o incrConnComp.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from incrConnComp.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from incrConnComp.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
incrConnComp.cpp: In function 'SEXPREC* BGL_incr_comp_internal(SEXPREC*, SEXPREC*, SEXPREC*, E_IC_METHOD)':
incrConnComp.cpp:74: warning: unused variable 'child_index'
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c interfaces.cpp -o interfaces.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from interfaces.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from interfaces.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator, std::allocator > > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c minST.cpp -o minST.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c mincut.cpp -o mincut.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp: In member function 'void boost::detail::push_relabel::discharge(typename boost::graph_traits::vertex_descriptor) [with Graph = boost::adjacency_list, boost::no_property> > >, boost::no_property, boost::listS>, EdgeCapacityMap = boost::adj_list_edge_property_map, boost::no_property> > >, boost::edge_capacity_t>, ResidualCapacityEdgeMap = boost::adj_list_edge_property_map, boost::no_property> > >, boost::edge_residual_capacity_t>, ReverseEdgeMap = boost::adj_list_edge_property_map, const boost::detail::edge_desc_impl&, long unsigned int, const boost::property, boost::no_property> > >, boost::edge_reverse_t>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, FlowValue = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp:347: warning: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator, boost::no_property> > > >*, std::vector, boost::no_property> > > >, std::allocator, boost::no_property> > > > > > >, long unsigned int, boost::detail::edge_desc_impl, int>::m_src' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp:347: note: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator, boost::no_property> > > >*, std::vector, boost::no_property> > > >, std::allocator, boost::no_property> > > > > > >, long unsigned int, boost::detail::edge_desc_impl, int>::m_src' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, E_MF_METHOD)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c ordering.cpp -o ordering.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from ordering.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from ordering.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: "BGL_FORALL_VERTICES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: "BGL_FORALL_EDGES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: "BGL_FORALL_ADJ_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c planar.cpp -o planar.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from planar.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from planar.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: "BGL_FORALL_VERTICES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: "BGL_FORALL_EDGES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: "BGL_FORALL_ADJ_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: this is the location of the previous definition
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:151: warning: comparison between signed and unsigned integer expressions
planar.cpp:153: warning: comparison between signed and unsigned integer expressions
planar.cpp:161: warning: comparison between signed and unsigned integer expressions
planar.cpp:165: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:256: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:369: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:461: warning: unused variable 'i'
planar.cpp: In function 'SEXPREC* makeConnected(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:485: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* makeBiconnectedPlanar(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:539: warning: comparison between signed and unsigned integer expressions
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder::augment_matching() [with Graph = R_adjacency_list, MateMap = long unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:231: warning: 'w' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:231: warning: 'v' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp: In member function 'void boost::boyer_myrvold_impl::extract_kuratowski_subgraph(OutputIterator, EdgeIndexMap) [with OutputIterator = std::back_insert_iterator, std::allocator > > >, EdgeIndexMap = boost::adj_list_edge_property_map, boost::edge_index_t>, Graph = boost::adjacency_list, boost::property, boost::no_property, boost::listS>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long unsigned int>, StoreOldHandlesPolicy = boost::graph::detail::store_old_handles, StoreEmbeddingPolicy = boost::graph::detail::no_embedding]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1279: warning: 'previous_vertex' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1238: warning: 'bicomp_root' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1237: warning: 'z' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list, boost::property, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >, boost::vec_adj_list_vertex_id_map, long unsigned int>, std::vector, std::allocator > >, std::vector, std::allocator > >&>, OutputIterator = std::back_insert_iterator > >, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp:68: warning: 'second_vertex' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/chrobak_payne_drawing.hpp: In function 'void boost::chrobak_payne_straight_line_drawing(const Graph&, PlanarEmbedding, ForwardIterator, ForwardIterator, GridPositionMap, VertexIndexMap) [with Graph = boost::adjacency_list, boost::property, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >, boost::vec_adj_list_vertex_id_map, long unsigned int>, std::vector, std::allocator > >, std::vector, std::allocator > >&>, ForwardIterator = __gnu_cxx::__normal_iterator > >, GridPositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map, long unsigned int>, coord_t, coord_t&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/chrobak_payne_drawing.hpp:219: warning: 'next_to_rightmost' may be used uninitialized in this function
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c shortestPath.cpp -o shortestPath.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, long unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:119: note: 'dvis' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c sna.cpp -o sna.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, long unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:119: note: 'dvis' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c transitive_closure.cpp -o transitive_closure.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/depth_first_search.hpp:18,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:17,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/depth_first_search.hpp:18,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:17,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c wavefront.cpp -o wavefront.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from wavefront.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from wavefront.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.10-bioc/meat/RBGL.buildbin-libdir/RBGL/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'RBGL.Rnw' 
** testing if installed package can be loaded

* DONE (RBGL)


>>>>>>> 
>>>>>>> FIXING LINKS FOR RBGL.buildbin-libdir/RBGL/libs/i386/RBGL.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "RBGL.buildbin-libdir/RBGL/libs/i386/RBGL.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "RBGL.buildbin-libdir/RBGL/libs/i386/RBGL.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "RBGL.buildbin-libdir/RBGL/libs/i386/RBGL.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "RBGL.buildbin-libdir/RBGL/libs/i386/RBGL.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=RBGL.buildbin-libdir --libs-only RBGL_1.32.1.tar.gz'
>>>>>>> 

* installing *source* package 'RBGL' ...
removing exploded boost header source...
found  rbgl_trimmed_boost_1_49_0  header sources and tar archive;
 using what is there.
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c bbc.cpp -o bbc.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from bbc.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from bbc.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c cliques.cpp -o cliques.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from cliques.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from cliques.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c clusteringCoef.cpp -o clusteringCoef.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from clusteringCoef.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from clusteringCoef.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c dominatorTree.cpp -o dominatorTree.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from dominatorTree.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from dominatorTree.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from edmonds_optimum_branching.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from edmonds_optimum_branching.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c hcs.cpp -o hcs.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from hcs.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from hcs.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list, OutputIterator = std::back_insert_iterator > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c incrConnComp.cpp -o incrConnComp.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from incrConnComp.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from incrConnComp.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
incrConnComp.cpp: In function 'SEXPREC* BGL_incr_comp_internal(SEXPREC*, SEXPREC*, SEXPREC*, E_IC_METHOD)':
incrConnComp.cpp:74: warning: unused variable 'child_index'
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c interfaces.cpp -o interfaces.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from interfaces.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from interfaces.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator, std::allocator > > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c minST.cpp -o minST.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from minST.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c mincut.cpp -o mincut.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from mincut.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp: In member function 'void boost::detail::push_relabel::discharge(typename boost::graph_traits::vertex_descriptor) [with Graph = boost::adjacency_list, boost::no_property> > >, boost::no_property, boost::listS>, EdgeCapacityMap = boost::adj_list_edge_property_map, boost::no_property> > >, boost::edge_capacity_t>, ResidualCapacityEdgeMap = boost::adj_list_edge_property_map, boost::no_property> > >, boost::edge_residual_capacity_t>, ReverseEdgeMap = boost::adj_list_edge_property_map, const boost::detail::edge_desc_impl&, long unsigned int, const boost::property, boost::no_property> > >, boost::edge_reverse_t>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, FlowValue = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp:347: warning: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator, boost::no_property> > > >*, std::vector, boost::no_property> > > >, std::allocator, boost::no_property> > > > > > >, long unsigned int, boost::detail::edge_desc_impl, long int>::m_src' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/push_relabel_max_flow.hpp:347: note: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator, boost::no_property> > > >*, std::vector, boost::no_property> > > >, std::allocator, boost::no_property> > > > > > >, long unsigned int, boost::detail::edge_desc_impl, long int>::m_src' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, E_MF_METHOD)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator > >]':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c ordering.cpp -o ordering.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from ordering.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from ordering.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: "BGL_FORALL_VERTICES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: "BGL_FORALL_EDGES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/detail/sparse_ordering.hpp:25,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/cuthill_mckee_ordering.hpp:15,
                 from ordering.cpp:3:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: "BGL_FORALL_ADJ_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from ordering.cpp:2:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: this is the location of the previous definition
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c planar.cpp -o planar.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from planar.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from planar.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: "BGL_FORALL_VERTICES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:60:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: "BGL_FORALL_EDGES_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:76:1: warning: this is the location of the previous definition
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_utility.hpp:471,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/biconnected_components.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/make_biconnected_planar.hpp:13,
                 from planar.cpp:9:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: "BGL_FORALL_ADJ_T" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/isomorphism.hpp:22,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/is_kuratowski_subgraph.hpp:16,
                 from planar.cpp:7:
rbgl_trimmed_boost_1_49_0/boost/graph/iteration_macros.hpp:92:1: warning: this is the location of the previous definition
planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:151: warning: comparison between signed and unsigned integer expressions
planar.cpp:153: warning: comparison between signed and unsigned integer expressions
planar.cpp:161: warning: comparison between signed and unsigned integer expressions
planar.cpp:165: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:256: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:369: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:461: warning: unused variable 'i'
planar.cpp: In function 'SEXPREC* makeConnected(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:485: warning: comparison between signed and unsigned integer expressions
planar.cpp: In function 'SEXPREC* makeBiconnectedPlanar(SEXPREC*, SEXPREC*, SEXPREC*)':
planar.cpp:539: warning: comparison between signed and unsigned integer expressions
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp: In member function 'void boost::boyer_myrvold_impl::extract_kuratowski_subgraph(OutputIterator, EdgeIndexMap) [with OutputIterator = std::back_insert_iterator, std::allocator > > >, EdgeIndexMap = boost::adj_list_edge_property_map, boost::edge_index_t>, Graph = boost::adjacency_list, boost::property, boost::no_property, boost::listS>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long unsigned int>, StoreOldHandlesPolicy = boost::graph::detail::store_old_handles, StoreEmbeddingPolicy = boost::graph::detail::no_embedding]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1279: warning: 'previous_vertex' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1238: warning: 'bicomp_root' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1237: warning: 'z' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder::augment_matching() [with Graph = R_adjacency_list, MateMap = long unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:231: warning: 'w' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/max_cardinality_matching.hpp:231: warning: 'v' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/chrobak_payne_drawing.hpp: In function 'void boost::chrobak_payne_straight_line_drawing(const Graph&, PlanarEmbedding, ForwardIterator, ForwardIterator, GridPositionMap, VertexIndexMap) [with Graph = boost::adjacency_list, boost::property, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >, boost::vec_adj_list_vertex_id_map, long unsigned int>, std::vector, std::allocator > >, std::vector, std::allocator > >&>, ForwardIterator = __gnu_cxx::__normal_iterator > >, GridPositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map, long unsigned int>, coord_t, coord_t&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/chrobak_payne_drawing.hpp:219: warning: 'next_to_rightmost' may be used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list, boost::property, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >, boost::vec_adj_list_vertex_id_map, long unsigned int>, std::vector, std::allocator > >, std::vector, std::allocator > >&>, OutputIterator = std::back_insert_iterator > >, VertexIndexMap = boost::vec_adj_list_vertex_id_map, long unsigned int>]':
rbgl_trimmed_boost_1_49_0/boost/graph/planar_canonical_ordering.hpp:68: warning: 'second_vertex' may be used uninitialized in this function
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c shortestPath.cpp -o shortestPath.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from shortestPath.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, long unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:119: note: 'dvis' was declared here
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c sna.cpp -o sna.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from sna.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, long unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]':
rbgl_trimmed_boost_1_49_0/boost/graph/dijkstra_shortest_paths.hpp:119: warning: 'dvis' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/johnson_all_pairs_shortest.hpp:119: note: 'dvis' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:272: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function
rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:2203: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c transitive_closure.cpp -o transitive_closure.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/depth_first_search.hpp:18,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:17,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/depth_first_search.hpp:18,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/strong_components.hpp:17,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/transitive_closure.hpp:18,
                 from transitive_closure.cpp:16:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/x86_64 -DNDEBUG  -I/usr/local/include   -Irbgl_trimmed_boost_1_49_0 -fPIC  -g -O2 -Wall -fasm-blocks  -c wavefront.cpp -o wavefront.o
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:26,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from wavefront.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: "BOOST_concept" redefined
In file included from rbgl_trimmed_boost_1_49_0/boost/graph/buffer_concepts.hpp:9,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/graph_concepts.hpp:21,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/detail/adjacency_list.hpp:31,
                 from rbgl_trimmed_boost_1_49_0/boost/graph/adjacency_list.hpp:337,
                 from RBGL.hpp:37,
                 from wavefront.cpp:1:
rbgl_trimmed_boost_1_49_0/boost/concept/detail/concept_def.hpp:34:1: warning: this is the location of the previous definition
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.10-bioc/meat/RBGL.buildbin-libdir/RBGL/libs/x86_64

* DONE (RBGL)


>>>>>>> 
>>>>>>> FIXING LINKS FOR RBGL.buildbin-libdir/RBGL/libs/x86_64/RBGL.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgcc_s.1.dylib" "RBGL.buildbin-libdir/RBGL/libs/x86_64/RBGL.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libgfortran.2.dylib" "RBGL.buildbin-libdir/RBGL/libs/x86_64/RBGL.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.5.2.dylib" "RBGL.buildbin-libdir/RBGL/libs/x86_64/RBGL.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.15/Resources/lib/libreadline.dylib" "RBGL.buildbin-libdir/RBGL/libs/x86_64/RBGL.so"