rsbml 1.4.0
Michael Lawrence
| Snapshot Date: 2008-04-09 12:13:20 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_1/madman/Rpacks/rsbml | | Last Changed Rev: 28216 / Revision: 30966 | | Last Changed Date: 2007-10-24 23:40:40 -0700 (Wed, 24 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Tiger (10.4.11) / i386 | N O T S U P P O R T E D |
installing R.css in D:/biocbld/bbs-2.1-bioc/meat/rsbml.buildbin-libdir
Using auto-selected zip options ' rsbml-HELP=ziponly'
---------- Making package rsbml ------------
adding build stamp to DESCRIPTION
making DLL ...
making check.d from check.c
making doc.d from doc.c
making dom.d from dom.c
making graph.d from graph.c
making init.d from init.c
making io.d from io.c
gcc-sjlj -std=gnu99 -ID:/biocbld/bbs-2.1-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c check.c -o check.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from check.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc-sjlj -std=gnu99 -ID:/biocbld/bbs-2.1-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c doc.c -o doc.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from doc.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc-sjlj -std=gnu99 -ID:/biocbld/bbs-2.1-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c dom.c -o dom.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from dom.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc-sjlj -std=gnu99 -ID:/biocbld/bbs-2.1-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c graph.c -o graph.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from graph.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc-sjlj -std=gnu99 -ID:/biocbld/bbs-2.1-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c init.c -o init.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from init.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
gcc-sjlj -std=gnu99 -ID:/biocbld/bbs-2.1-bioc/R/include -g -D_R_=1 -DUSE_R=1 -IC:/SBML/libsbml-2.3.4-expat/win32/include/sbml -IC:/SBML/libsbml-2.3.4-expat/win32/include/expat -ID:/biocbld/bbs-2.1-bioc/R/include -O3 -Wall -c io.c -o io.o
In file included from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLDocument.h:56,
from C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/SBMLTypes.h:56,
from rsbml.h:4,
from io.c:1:
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:79: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:84: warning: ignoring #pragma warning
C:/SBML/libsbml-2.3.4-expat/win32/include/sbml/common/extern.h:87: warning: ignoring #pragma warning
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I D:/biocbld/bbs-2.1-bioc/R/include -i rsbml_res.rc -o rsbml_res.o
gcc-sjlj -std=gnu99 -shared -s -o rsbml.dll rsbml.def check.o doc.o dom.o graph.o init.o io.o rsbml_res.o -LD:/biocbld/bbs-2.1-bioc/R/bin -LC:/SBML/libsbml-2.3.4-expat/win32/bin -lsbml -lR
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'rsbml'
Formats: text html latex example chm
AlgebraicRule-class text html latex chm
AssignmentRule-class text html latex chm
BoundingBox-class text html latex chm
Compartment-class text html latex chm
CompartmentGlyph-class text html latex chm
CompartmentType-class text html latex chm
CompartmentVolumeRule-class text html latex chm
Constraint-class text html latex chm
CubicBezier-class text html latex chm
Curve-class text html latex chm
Delay-class text html latex chm
Dimensions-class text html latex chm
Event-class text html latex chm
EventAssignment-class text html latex chm
FunctionDefinition-class text html latex chm
GraphicalObject-class text html latex chm
InitialAssignment-class text html latex chm
KineticLaw-class text html latex chm
Layout-class text html latex chm
LineSegment-class text html latex chm
Model-class text html latex chm
ModifierSpeciesReference-class text html latex chm
Parameter-class text html latex chm
ParameterRule-class text html latex chm
Point-class text html latex chm
RateRule-class text html latex chm
Reaction-class text html latex chm
ReactionGlyph-class text html latex chm
Rule-class text html latex chm
SBML-class text html latex example chm
SBMLDocument-class text html latex example chm
SBase-class text html latex chm
SimpleSpeciesReference-class text html latex chm
Species-class text html latex chm
SpeciesConcentrationRule-class text html latex chm
SpeciesGlyph-class text html latex chm
SpeciesReference-class text html latex chm
SpeciesReferenceGlyph-class text html latex chm
SpeciesType-class text html latex chm
StoichiometryMath-class text html latex chm
TextGlyph-class text html latex chm
Trigger-class text html latex chm
Unit-class text html latex chm
UnitDefinition-class text html latex chm
read text html latex example chm
zipping help files
HHC5012: Error: Cannot create a temporary file in your TEMP path.
HHC4016: Warning: Cannot open "AC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.1-bioc\meat\R.INSTALL.588\rsbml\chm\rsbml.chm
HHC4016: Warning: Cannot open "AC NetAffx;c:\gs\gs8.51\bin;c:\Program Files\Java\jdk1.5.0_06\bin;c:\program files\imagemagick-6.3.2-q16;c:\Program Files\MySQL\MySQL Server 5.0\bin;c:\Program Files\ggobi".
The following files were not compiled:
preparing package rsbml for lazy loading
Loading required package: graph
New generic for "curve" does not agree with implicit generic from package "graphics"; a new generic will be assigned with package "rsbml"
New generic for "delay" does not agree with implicit generic from package "base"; a new generic will be assigned with package "rsbml"
New generic for "scale" does not agree with implicit generic from package "base"; a new generic will be assigned with package "rsbml"
adding MD5 sums
packaged installation of package 'rsbml' as rsbml_1.4.0.zip
* DONE (rsbml)